Table 3 Summary of difference detection results by combining different statistical tests.
From: Using a spike-in experiment to evaluate analysis of LC-MS data
| Â | msInspect | MZmine 2 | Progenesis | XCMS |
|---|---|---|---|---|
Total number of features detected | 31168 (12) | 12271 (12) | 9267 (9) | 21486 (13) |
Number of features used for statistical analysis | 6525 (9) | 12092 (9) | 8415 (9) | 8703 (10) |
t-test (q < 0.05) | 4824 (9) | 3505 (7) | 4465 (9) | 1896 (7) |
Wilcoxon rank-sum test (p < 0.05) | 603 (8) | 1318 (6) | 1584 (8) | 812 (8) |
t-test (q < 0.05) + Wilcoxon (p < 0.05) | 603 (8) | 967 (6) | 1379 (8) | 672 (7) |
t-test (q < 0.05) + FC (> 10) | 2099 (9) | 539 (7) | 467 (8) | 66 (7) |
t-test (q < 0.05) + Wilcoxon (p < 0.05) + FC (> 10) | 388 (8) | 323 (6) | 238 (7) | 55 (7) |