Volume 11 Supplement 1

Selected articles from the IEEE International Conference on Bioinformatics and Biomedicine 2012: Proteome Science

Research

Edited by Fang-Xiang Wu, Jianxin Wang and Xiaohua Hu

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for the publication charges can be found in the individual articles. Articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

IEEE International Conference on Bioinformatics and Biomedicine 2012. Go to conference site.

Philadelphia, PA, USA

4-7 October 2012

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  1. Research

    A combined approach for genome wide protein function annotation/prediction

    Today large scale genome sequencing technologies are uncovering an increasing amount of new genes and proteins, which remain uncharacterized. Experimental procedures for protein function prediction are low thr...

    Alfredo Benso, Stefano Di Carlo, Hafeez ur Rehman, Gianfranco Politano, Alessandro Savino and Prashanth Suravajhala

    Proteome Science 2013 11(Suppl 1):S1

    Published on: 7 November 2013

  2. Research

    HMPAS: Human Membrane Protein Analysis System

    Membrane proteins perform essential roles in diverse cellular functions and are regarded as major pharmaceutical targets. The significance of membrane proteins has led to the developing dozens of resources rel...

    Min-Sung Kim and Gwan-Su Yi

    Proteome Science 2013 11(Suppl 1):S7

    Published on: 7 November 2013

  3. Research

    Peptide identification based on fuzzy classification and clustering

    The sequence database searching has been the dominant method for peptide identification, in which a large number of peptide spectra generated from LC/MS/MS experiments are searched using a search engine agains...

    Xijun Liang, Zhonghang Xia, Xinnan Niu, Andrew J Link, Liping Pang, Fang-Xiang Wu and Hongwei Zhang

    Proteome Science 2013 11(Suppl 1):S10

    Published on: 7 November 2013

  4. Research

    PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data

    Phosphorylation site assignment of high throughput tandem mass spectrometry (LC-MS/MS) data is one of the most common and critical aspects of phosphoproteomics. Correctly assigning phosphorylated residues help...

    Fahad Saeed, Trairak Pisitkun, Jason D Hoffert, Sara Rashidian, Guanghui Wang, Marjan Gucek and Mark A Knepper

    Proteome Science 2013 11(Suppl 1):S14

    Published on: 7 November 2013

  5. Research

    An effective and effecient peptide binding prediction approach for a broad set of HLA-DR molecules based on ordered weighted averaging of binding pocket profiles

    The immune system must detect a wide variety of microbial pathogens, such as viruses, bacteria, fungi and parasitic worms, to protect the host against disease. Antigenic peptides displayed by MHC II (class II ...

    Wen-Jun Shen, Shaohong Zhang and Hau-San Wong

    Proteome Science 2013 11(Suppl 1):S15

    Published on: 7 November 2013

  6. Research

    Semi-supervised method for biomedical event extraction

    Biomedical extraction based on supervised machine learning still faces the problem that a limited labeled dataset does not saturate the learning method. Many supervised learning algorithms for bio-event extrac...

    Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang and Yanpeng Li

    Proteome Science 2013 11(Suppl 1):S17

    Published on: 7 November 2013

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