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Table 2 List with the proteins that were differentially identified by LC-MS/MS analysis of the plasma membranes of undifferentiated (−) and differentiated (+) cells (experiment #2)

From: Proteomic analysis of plasma membranes isolated from undifferentiated and differentiated HepaRG cells

  Proteins identified only in (-) cells
Protein Accession # Protein_description
gi|458470 carboxylesterase [Homo sapiens]
gi|62088648 tumor rejection antigen (gp96) 1 variant [Homo sapiens]
gi|28614 aldolase A [Homo sapiens]
gi|18645167 Annexin A2 [Homo sapiens]
gi|31179 enolase [Homo sapiens]
gi|34707 Manganese superoxide dismutase [Homo sapiens]
gi|4502013 adenylate kinase 2, mitochondrial isoform a [Homo sapiens]
gi|178390 aldehyde dehydrogenase [Homo sapiens]
gi|4504505 peroxisomal multifunctional enzyme type 2 isoform 2 [Homo sapiens]
gi|4503285 aldo-keto reductase family 1 member C2 isoform 1 [Homo sapiens]
gi|1723158 dihydrodiol dehydrogenase/bile acid-binding protein [Homo sapiens]
gi|6009628 brain carboxylesterase hBr3 [Homo sapiens]
gi|386758 GRP78 precursor [Homo sapiens]
gi|4507913 wiskott-Aldrich syndrome protein family member
  Proteins identified only in (+) cells
gi|306891 90kDa heat shock protein [Homo sapiens]
gi|1633054 Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
gi|4507677 endoplasmin precursor [Homo sapiens]
gi|75766275 Chain A, Crystal Structure Of Human Cypa Mutant K131a
gi|61656603 Heat shock protein HSP 90 - alpha 2 [Homo sapiens]
gi|179930 carboxylesterase [Homo sapiens]
gi|2981743 Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
gi|4757756 annexin A2 isoform 2 [Homo sapiens]
gi|4826898 profilin-1 [Homo sapiens]
gi|342350777 Chain A, Human Annexin V With Incorporated Methionine Analogue Azidohomoalanine
gi|32189394 ATP synthase subunit beta, mitochondrial precursor [Homo sapiens]
gi|157833780 Chain A, Human Annexin V With Proline Substitution By Thioproline
gi|53791219 filamin A [Homo sapiens]
gi|31645 glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]
gi|14327942 HSP90B1 protein [Homo sapiens]
gi|28614 aldolase A [Homo sapiens]
gi|662841 heat shock protein 27 [Homo sapiens]
gi|999892 Chain A, Crystal Structure Of Recombinant Human Triosephosphate Isomerase At 2.8 Angstroms
  Resolution.
gi|35505 pyruvate kinase [Homo sapiens]
gi|693933 2-phosphopyruvate-hydratase alpha-enolase [Homo sapiens]
gi|4503483 elongation factor 2 [Homo sapiens]
gi|5729877 heat shock cognate 71 kDa protein isoform 1 [Homo sapiens]
gi|4505591 peroxiredoxin-1 [Homo sapiens]
gi|6525069 tumor necrosis factor type 1 receptor associated protein [Homo sapiens]
gi|4502101 annexin A1 [Homo sapiens]
gi|189617 protein PP4-X [Homo sapiens]
gi|4758012 clathrin heavy chain 1 [Homo sapiens]
gi|34419635 70kDa heat shock protein 6 [Homo sapiens]
gi|4507357 transgelin-2 [Homo sapiens]
gi|577295 KIAA0088 [Homo sapiens]
gi|35830 ubiquitin activating enzyme E1 [Homo sapiens]
gi|6470150 BiP protein [Homo sapiens]
gi|5453790 nicotinamide N-methyltransferase [Homo sapiens]
gi|5803227 14-3-3 protein theta [Homo sapiens]
gi|38648667 Fatty acid synthase [Homo sapiens]
gi|31746 glutathione-insulin transhydrogenase (216 AA) [Homo sapiens]
gi|1421609 Chain A, X-Ray Structure Of Nm23 Human Nucleoside Diphosphate Kinase B Complexed With
  Gdp At 2 Angstroms Resolution
gi|438069 thiol-specific antioxidant protein [Homo sapiens]
gi|61104911 heat shock protein 90Bb [Homo sapiens]
gi|4758304 protein disulfide-isomerase A4 precursor [Homo sapiens]
gi|5802974 thioredoxin-dependent peroxide reductase, mitochondrial isoform a precursor [Homo sapiens]
gi|3318841 Chain A, Horf6 A Novel Human Peroxidase Enzyme
gi|230867 Chain R, Twinning In Crystals Of Human Skeletal Muscle D- Glyceraldehyde-3-Phosphate
gi|230867 Dehydrogenase
gi|5031857 L-lactate dehydrogenase A chain isoform 1 [Homo sapiens]
gi|4507877 vinculin isoform VCL [Homo sapiens]
gi|1710248 protein disulfide isomerase-related protein 5 [Homo sapiens]
gi|5031635 cofilin-1 [Homo sapiens]
gi|83753119 Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues 1- 1066)
gi|157879202 Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications
  For Lysosomal Targeting And Drug Design
gi|74722493 RecName: Full=Putative heat shock protein HSP 90-alpha A4; AltName: Full=Heat shock 90 kDa
gi|74722493 protein 1 alpha-like 2; AltName: Full=Heat shock protein 90-alpha D
gi|181250 cyclophilin [Homo sapiens]
gi|182855 80K-H protein [Homo sapiens]
gi|37267 transketolase [Homo sapiens]
gi|1065111 Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between
  Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb
gi|1477646 plectin [Homo sapiens]
gi|4507953 14-3-3 protein zeta/delta [Homo sapiens]
gi|2138314 lysyl hydroxylase isoform 2 [Homo sapiens]
gi|283807248 Chain A, Crystal Structure Analysis Of W21a Mutant Of Human Gsta1-1 In Complex With
  S-Hexylglutathione
gi|6005942 transitional endoplasmic reticulum ATPase [Homo sapiens]
gi|1065322 Chain A, A Surface Mutant (G82r) Of A Human Alpha-Glutathione S- Transferase Shows Decreased
gi|1065322 Thermal Stability And A New Mode Of Molecular Association In The Crystal
gi|799177 100 kDa coactivator [Homo sapiens]
gi|4505753 phosphoglycerate mutase 1 [Homo sapiens]
gi|5107666 Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha
gi|158937236 puromycin-sensitive aminopeptidase [Homo sapiens]
gi|5825506 fatty acid synthase/estrogen receptor fusion protein [Homo sapiens]
gi|5257007 beta-cop homolog [Homo sapiens]
gi|896473 iron-responsive regulatory protein/iron regulatory protein 1 [Homo sapiens]
gi|34707 Manganese superoxide dismutase [Homo sapiens]
gi|4506715 40S ribosomal protein S28 [Homo sapiens]
gi|3212355 Chain A, P11 (S100a10), Ligand Of Annexin Ii
gi|1065361 Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length Non-Myristoylated
gi|159162145 Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity
gi|51247357 Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin
gi|215273984 RecName: Full=Putative inactive carboxylesterase 4; AltName: Full=Inactive carboxylesterase 1
gi|215273984 pseudogene 1; AltName: Full=Placental carboxylesterase 3; Short=PCE-3; Flags: Precursor
gi|4502013 adenylate kinase 2, mitochondrial isoform a [Homo sapiens]
gi|5803013 endoplasmic reticulum resident protein 29 isoform 1 precursor [Homo sapiens]
gi|229532 ubiquitin
gi|31615803 Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67
gi|2627129 polyubiquitin [Homo sapiens]
gi|6755368 40S ribosomal protein S18 [Mus musculus]
gi|313103963 Chain D, Structure And Control Of The Actin Regulatory Wave Complex
gi|6114601 stromal antigen 3, (STAG3) [Homo sapiens]
gi|4588526 nuclear chloride channel [Homo sapiens]
  Proteins identified in(-) and (+) cells
gi|32189394 ATP synthase subunit beta, mitochondrial precursor [Homo sapiens]
gi|31645 glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]
gi|1710248 protein disulfide isomerase-related protein 5 [Homo sapiens]
gi|215273984 RecName: Full=Putative inactive carboxylesterase 4; AltName: Full=Inactive carboxylesterase 1
gi|215273984 pseudogene 1; AltName: Full=Placental carboxylesterase 3; Short=PCE-3; Flags: Precursor
gi|4758304 protein disulfide-isomerase A4 precursor [Homo sapiens]
gi|4505591 peroxiredoxin-1 [Homo sapiens]
gi|303618 phospholipase C-alpha [Homo sapiens]
gi|5031857 L-lactate dehydrogenase A chain isoform 1 [Homo sapiens]
gi|5802974 thioredoxin-dependent peroxide reductase, mitochondrial isoform a precursor [Homo sapiens]
gi|306891 90kDa heat shock protein [Homo sapiens]