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Table 1 Protein identification by MALDI-TOF/TOF-MS of tryptic peptides obtained from 2-DE spots of T98G and U87MG glioma cell lines

From: Changes in the expression of proteins associated with aerobic glycolysis and cell migration are involved in tumorigenic ability of two glioma cell lines

Spot ID

U87MG / T98G Expression ratio ± c.v.

T98G / U87MG Expression ratio ± c.v.

Anova (p value)

Accession number (MW / pI)

Protein name

CID - MS/MS

Prot score

% seq cov

Unique peptides

Peptide sequence

1

1.34 ± 0.09

-

0.0053

UBIQ_HUMAN (8565/6.56)

Ubiquitin

302

61.8

1040.24

34EGIPPDQQR42

        

1068.35

64ESTLHLVLR72

        

1082.37

55TLSDYNIQK63

        

1525.84

30IQDKEGIPPDQQR42

2

1.92 ± 0.34

-

0.0422

S10AA_HUMAN (17259/9.59)

Protein S100-A10

58

10.3

1208.80

38EFPGFLENQK47

3

1.95 ± 0.52

-

0.0304

SSBP_HUMAN (17259/9.59)

Single-stranded DNA-binding protein, Mitochondrial

263

21.6

986.26

96DVAYQYVK103

        

1150.37

114IDYGEYMDK122

        

1613.00

67SGDSEVYQLGDVSQK81

4

1.87 ± 0.40

-

0.0356

PTMS_HUMAN (11530/4.14)

Parathymosin

67

10.8

1076.33

5SVEAAAELSAK15

5

1.37 ± 0.18

-

0.0474

TEBP_HUMAN (18982 / 4.35)

Prostaglandin E synthase 3

230

18.8

922.18

72SILCCLR78

        

1004.22

80GESGQSWPR88

        

1132.42

79KGESGQSWPR88

        

1446.70

36LTFSCLGGSDNFK48

6

1.39 ± 0.19

-

0.0454

TPIS_HUMAN (26954 / 6.45)

Triosephosphate isomerase

530

34.5

955.17

7FVGGNWK14

        

1138.43

60IAVAAQNCYK69

        

1235.51

195SNVSDAVAQSTR206

        

1327.64

207IIYGGSVTGATCK219

        

1467.77

176TATPQQAQEVHEK188

        

1587.88

86DCGATWVVLGHSER99

        

1639.98

70VTNGAFTGEISPGMIK85

7

2.40 ± 0.52

-

0.0351

TPM4_HUMAN (28636 / 4.67)

Tropomyosin alpha-4 chain

253

17.7

1015.23

45AEGDVAALNR54

        

1171.50

133LVILEGELER142

        

1244.53

56IQLVEEELDR65

        

1615.87

14IQALQQQADEAEDR27

8

3.26 ± 0.47

-

0.0023

1433E_HUMAN (29345 / 4.63)

14-3-3 protein epsilon

519

28.2

908.21

43NLLSVAYK50

        

1206.57

216DSTLIMQLLR225

        

1238.60

107HLIPAANTGESK118

        

1257.58

131YLAEFATGNDR141

        

1385.78

131YLAEFATGNDRK142

        

1448.74

30VAGMDVELTVEER42

        

1837.36

154AASDIAMTELPPTHPIR170

9

1.57 ± 0.32

-

0.0458

LDHB_HUMAN (36923 / 5.71)

L-lactate dehydrogenase B chain

372

16.8

914.25

92IVVVTAGVR100

        

960.27

300GLTSVINQK308

        

1177.46

320SADTLWDIQK329

        

1249.48

159VIGSGCNLDSAR170

        

1696.03

8LIAPVAEEEATVPNNK23

10

2.19 ± 0.40

-

0.0330

ANXA1_HUMAN (38942 / 6.57)

Annexin A1

381

13.3

909.05

205ALYEAGER212

        

1214.35

167DITSDTSGDFR177

        

1263.42

114TPAQFDADELR124

        

1740.87

189SEDFGVNEDLADSDAR204

11

3.01 ± 1.08

-

0.0189

RINI_HUMAN(51799 / 4.71)

Ribonuclease inhibitor

579

18.7

1150.41

35LDDCGLTEAR44

        

1161.46

196DSPCQLEALK205

        

1210.51

54VNPALAELNLR64

        

1347.66

342FLLELQISNNR352

        

1514.91

360ELCQGLGQPGSVLR373

        

1531.76

288ELSLAGNELGDEGAR302

        

1631.88

174ELTVSNNDINEAGVR188

12

1.51 ± 0.17

-

0.0388

STMN1_HUMAN (17302 / 5.76)

Stathmin

219

29.5

1075.39

44DLSLEEIQK52

        

1166.46

86AIEENNNFSK95

        

1327.75

30ESVPEFPLSPPK41

        

1389.81

15ASGQAFELILSPR27

13

2.99 ± 1.16

-

0.0194

PRDX6_HUMAN (25149 / 6.0)

Peroxiredoxin-6

354

22.8

907.12

156NFDEILR162

        

916.19

175VATPVDWK182

        

1192.53

145LSILYPATTGR155

        

1396.66

42DFTPVCTTELGR53

        

1583.75

85DINAYNCEEPTEK97

14

1.39 ± 0.14

-

0.0311

PDIA3_HUMAN (57181 / 5.98)

Protein disulfide-isomerase A3

449

15.8

996.28

131QAGPASVPLR140

        

1085.33

95YGVSGYPTLK104

        

1173.40

336FVMQEEFSR344

        

1192.44

63LAPEYEAAATR73

        

1237.40

108DGEEAGAYDGPR119

        

1369.62

367SEPIPESNDGPVK379

        

1681.91

434MDATANDVPSPYEVR448

15

-

2.33 ± 0.51

0.0099

MIF_HUMAN(12647 / 7.74)

Macrophage migration inhibitory factor

79

17.4

1045.37

79LLCGLLAER87

        

1304.69

2PMFIVNTNVPR12

16

-

1.83 ± 0.28

0.0070

PPIA_HUMAN (18240 / 7.68)

Peptidyl-prolyl cis-trans isomerase A

337

32.7

1056.15

20VSFELFADK28

        

1155.24

83FEDENFILK91

        

1248.37

155KITIADCGQLE165

        

1295.21

134EGMNIVEAMER144

        

1615.52

56IIPGFMCQGGDFTR69

17

-

3.62 ± 0.65

0.0022

PRDX1_HUMAN (22338 / 8.27)

Peroxiredoxin-1

178

19.6

921.18

129GLFIIDDK136

        

1108.45

111TIAQDYGVLK120

        

1197.56

159LVQAFQFTDK168

        

1212.59

141QITVNDLPVGR151

18

-

2.30 ± 0.31

0.0009

EF1D_HUMAN (31236 / 4.9)

Elongation factor 1-delta

458

24.6

974.13

233LVPVGYGIR241

        

1088.16

39QENGASVILR48

        

1359.47

84IASLEVENQSLR95

        

1528.59

25FYEQMNGPVAGASR38

19

-

2.10 ± 0.60

0.0214

HNRPC_HUMAN (33727 / 4.95)

Heterogeneous nuclearribonucleoproteins C1/C2

123

8.8

904.11

136MYSYPAR142

        

944.28

143VPPPPPIAR151

        

1330.71

51GFAFVQYVNER61

20

-

1.87 ± 0.47

0.0476

SET_HUMAN(33488 / 4.23)

Protein SET

290

11.7

1209.45

123VEVTEFEDIK132

        

1274.57

58LNEQASEEILK68

        

1447.63

155EFHLNESGDPSSK167

21

-

3.87 ± 1.03

0.0340

G6PD_HUMAN (59712 / 6.39)

Glucose-6-phosphate1-dehydrogenase

516

15.7

947.20

10TQVCGILR17

        

1003.28

220IFGPIWNR227

        

1059.38

167IIVEKPFGR175

        

1133.39

321GYLDDPTVPR330

        

1174.51

183LSNHISSLFR192

        

1192.42

499VGFQYEGTYK508

        

1233.58

206EMVQNLMVLR215

        

1809.05

105NSYVAGQYDDAASYQR120

22

-

3.20 ± 1.20

0.0491

TBA1A_HUMAN (50820 / 4.94)

Tubulin alpha-1A chain

390

14.9

904.06

395FDLMYAK401

        

1016.30

327DVNAAIATIK336

        

1086.36

113EIIDLVLDR121

        

1250.36

312YMACCLLYR320

        

1719.98

216NLDIERPTYTNLNR229

        

1826.21

353VGINYQPPTVVPGGDLAK310

23

-

3.73 ± 1.52

0.0338

GRP78_HUMAN (72446 / 5.07)

78 kDa glucose-regulated protein

830

20.5

987.10

533LTPEEIER540

        

1192.36

465VYEGERPLTK474

        

1212.32

377EFFNGKEPSR386

        

1218.36

186DAGTIAGLNVMR197

        

1229.35

50VEIIANDQGNR60

        

1317.44

563NELESYAYSLK573

        

1431.53

102TWNDPSVQQDIK113

        

1461.64

354SDIDEIVLVGGSTR367

        

1567.70

61ITPSYVAFTPEGER74

        

1678.79

82NQLTSNPENTVFDAK96

        

1838.01

448SQIFSTASDNQPTVTIK464

24

-

1.69 ± 0.29

0.0224

GRP75_HUMAN (73965 / 5.87)

Stress-70 protein, mitochondrial

545

11.5

1243.42

207DAGQISGLNVLR218

        

1291.49

395VQQTVQDLFGR405

        

1362.58

349AQFEGIVTDLIR360

        

1451.59

86TTPSVVAFTADGER99

        

1463.67

378SDIGEVILVGGMTR391

        

1695.86

188NAVITVPAYFNDSQR202