Table 2 The number of proteins covered with various thresholds for HMMsearch, cluster filtering, and cluster merge.
Threshold | Merge with at least one overlap | Merge with at least 10% overlap | Merge with at least 20% overlap | ||||||
|---|---|---|---|---|---|---|---|---|---|
|  | 10 −10 | 10 −15 | 10 −20 | 10 −10 | 10 −15 | 10 −20 | 10 −10 | 10 −15 | 10 −20 |
20 | 4262 | 4556 | 4561 | 4661 | 4911 | 4907 | 4840 | 5063 | 5061 |
50 | 4262 | 4585 | 4590 | 4858 | 5073 | 5058 | 5050 | 5201 | 5216 |
100 | 4262 | 4585 | 4590 | 4947 | 5176 | 5135 | 5150 | 5303 | 5253 |
No Filter | 5693 | 5630 | 5630 | 5693 | 5630 | 5630 | 5693 | 5630 | 5630 |