Table 3 The number of SLGIs retained with various thresholds for HMMsearch, cluster filtering, and cluster merge.
Threshold | Merge with at least one overlap | Merge with at least 10% overlap | Merge with at least 20% overlap | ||||||
|---|---|---|---|---|---|---|---|---|---|
|  | 10 −10 | 10 −15 | 10 −20 | 10 −10 | 10 −15 | 10 −20 | 10 −10 | 10 −15 | 10 −20 |
20 | 6143 | 6648 | 6650 | 7110 | 7386 | 7408 | 7289 | 7820 | 7873 |
50 | 6143 | 6800 | 6802 | 7604 | 7681 | 7757 | 7770 | 8109 | 8370 |
100 | 6143 | 6800 | 6802 | 7710 | 7923 | 7951 | 8064 | 8376 | 8522 |
No Filter | 9592 | 9427 | 9427 | 9592 | 9427 | 9427 | 9592 | 9427 | 9427 |