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Table 2 Target PSMs output by PeptideProphet, Percolator and FC-Ranker

From: Peptide identification based on fuzzy classification and clustering

   TP+FP TP FP
    Total Full Half None Total
Yeast PeptideProphet 1481 1443 1374 68 1 38
  Percolator 1429 1393 1342 51 1 36
  FC-Ranker 1513 1475 1376 83 16 38
UPS1 PeptideProphet 582 566 403 147 16 16
  Percolator 450 438 278 144 16 12
  FC-Ranker 698 681 444 198 39 17
Tal08 PeptideProphet 982 957 881 76 0 25
  Percolator 978 953 895 58 0 25
  FC-Ranker 1119 1092 865 173 54 27