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Table 2 Target PSMs output by PeptideProphet, Percolator and FC-Ranker

From: Peptide identification based on fuzzy classification and clustering

  

TP+FP

TP

FP

   

Total

Full

Half

None

Total

Yeast

PeptideProphet

1481

1443

1374

68

1

38

 

Percolator

1429

1393

1342

51

1

36

 

FC-Ranker

1513

1475

1376

83

16

38

UPS1

PeptideProphet

582

566

403

147

16

16

 

Percolator

450

438

278

144

16

12

 

FC-Ranker

698

681

444

198

39

17

Tal08

PeptideProphet

982

957

881

76

0

25

 

Percolator

978

953

895

58

0

25

 

FC-Ranker

1119

1092

865

173

54

27