From: Integrating domain similarity to improve protein complexes identification in TAP-MS data
Network | Gavin_2006 | Krogan_2006 | ||
---|---|---|---|---|
Quality measures | BGCA | BGCA + BP | BGCA | BGCA + BP |
Sensitivity | 0.461 | 0.480 | 0.300 | 0.419 |
PPV | 0.711 | 0.709 | 0.550 | 0.595 |
Geometric accuracy | 0.573 | 0.583 | 0.406 | 0.499 |
Complex-wise Homogeneity | 0.307 | 0.326 | 0.134 | 0.221 |
Cluster-wise Homogeneity | 0.819 | 0.896 | 0.745 | 0.846 |
Geometric Homogeneity | 0.502 | 0.540 | 0.316 | 0.432 |
Precision | 0.670 | 0.714 | 0.371 | 0.428 |
Recall | 0.461 | 0.480 | 0.300 | 0.419 |
PR value | 0.556 | 0.585 | 0.334 | 0.423 |
Cluster-wise Jaccard | 0.536 | 0.583 | 0.255 | 0.321 |
Complex-wise Jaccard | 0.361 | 0.380 | 0.204 | 0.293 |
Jaccard FMeasure | 0.432 | 0.460 | 0.227 | 0.306 |
BH-Specificity | 0.867 | 0.901 | 0.740 | 0.840 |
BH-Sensitivity | 0.340 | 0.352 | 0.136 | 0.232 |
BH-FMeasure | 0.489 | 0.506 | 0.229 | 0.363 |