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Table 9 Expected values of evaluation results of randomised clustering of BGCA+BP on Gavin_2006 and Krogan_2006 networks using CYC2008 gold-standard.

From: Integrating domain similarity to improve protein complexes identification in TAP-MS data

 

Gavin_2006

Krogan_2006

Quality measures

Original

Random average

p-value

Original

Random average

p-value

Geometric accuracy

0.583

0.095

0.000

0.499

0.095

0.000

Geometric Homogeneity

0.540

0.123

0.000

0.432

0.093

0.000

PR value

0.585

0.072

0.000

0.423

0.064

0.000

Jaccard FMeausre

0.460

0.023

0.000

0.306

0.017

0.000

BH-Fmeasure

0.506

0.001

0.000

0.363

0.001

0.000

  1. *p-value is corrected.