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Table 3 CESSM results of semantic similarities in BP ontology without IEA annotations.

From: M-Finder: Uncovering functionally associated proteins from interactome data integrated with GO annotations

Similarity

Resnik

Lin

Jiang

simUI

simGIC

G-SESAME

simICNP

simICND

Sequence

0.727

0.627

0.533

0.695

0.736

0.618

0.696

0.695

   Pfam

0.451

0.381

0.274

0.425

0.438

0.371

0.452

0.453

   ECC

0.426

0.422

0.411

0.382

0.389

0.377

0.417

0.424

Resolution

0.893

0.912

0.357

0.883

0.870

0.899

0.961

0.978

  1. The semantic similarities in BP ontology from eight different methods were compared in terms of correlations with the similarities of other functional features. To measure semantic similarity, IEA annotations were excluded.
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Proteome Science

ISSN: 1477-5956