Figure 6
From: HopDock: a probabilistic search algorithm for decoy sampling in protein-protein docking
Analysis of Lowest lRMSD to Native Structures. Nine systems are selected to draw the lowest-lRMSD configuration obtained by HopDock. This configuration is drawn in opaque, with chains in blue and red. The native structure, over which the lowest-lRMSD configuration is superimposed to highlight structural differences, is drawn in transparent. The actual lRMSD between the two is shown below. Visualization is obtained through VMD [50].