Skip to main content

Table 2 Conservation threshold analysis.

From: HopDock: a probabilistic search algorithm for decoy sampling in protein-protein docking

PDB ID Threshold Nr. Triangles lRMSD (Å) Rrest - Rinterface
1FLT (V,Y) 0.25 2417 2.06 6.67
  0.50 2338 1.12 -3.50
  0.75 2080 1.03 1.27
1WWW (W, Y) 0.25 2900 2.29 -18.37
  0.50 2911 2.24 -7.45
  0.75 2854 2.60 6.62
1C1Y (A,B) 0.25 3385 1.89 -13.65
  0.50 3325 1.30 -38.64
  0.75 3306 1.45 -21.01
  1. Table shows the effect of three different conservation thresholds 0.25, 0.5, and 0.75 on the number of active triangles and lowest lRMSD to native structure.