Table 3 Final Results of HopDock presented in this work.
From: HopDock: a probabilistic search algorithm for decoy sampling in protein-protein docking
PDB ID (Chains) | Size | Budda [9] (Å) | Prev. [16] (Å) | pyDock [4] (Å) | ClusPro [6] (Å) | HopDock (Å) |
|---|---|---|---|---|---|---|
1C1Y (A,B) | 2034 | 1.2 | 1.3 | 10.4 | 7.2 | 1.9 |
1DS6 (A,B) | 2839 | 1.2 | 1.8 | 0.8 | 1.7 | 3.4 |
1TX4 (A,B) | 2957 | 1.4 | 2.4 | 18.5 | 4.7 | 1.0 |
1WWW (W,Y) | 1644 | 11.4 | 2.2 | 18.2 | 17.2 | 2.2 |
1FLT (V,Y) | 1528 | 1.5 | 1.1 | 2.8 | 4.7 | 1.5 |
1IKN (A,C) | 3178 | 1.2 | 2.0 | 20.1 | 19.7 | 2.2 |
1IKN (C,D) | 2505 | 2.0 | 2.0 | 16.7 | 20.9 | 4.6 |
1VCB (A,B) | 1447 | 0.7 | 2.1 | 1.4 | 1.9 | 3.6 |
1VCB (B,C) | 1846 | 1.3 | 1.3 | 22.7 | 1.9 | 1.7 |
1OHZ (A,B) | 1443 | 1.8 | 1.7 | 7.5 | 3.3 | 2.2 |
1T6G (A,C) | 4022 | 1.6 | 2.5 | 0.1 | 14.8 | 2.5 |
1ZHI (A,B) | 2633 | 25.3 | 1.7 | 23.8 | 24.1 | 3.3 |
2HQS (A,C) | 3983 | 29.1 | 2.2 | 15.2 | 16.6 | 2.6 |
1QAV (A,B) | 1503 | 1.4 | 1.0 | 9.6 | 1.7 | 2.6 |
1G4Y (B,R) | 1838 | 0.8 | 2.3 | 26.2 | 1.9 | 4.1 |
1CSE (E,I) | 2442 | 0.7 | 1.5 | 13.2 | 1.1 | 2.7 |
1G4U (R,S) | 4188 | 1.0 | 2.2 | 27.6 | 16.1 | 5.6 |