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Table 5 Timing comparison.

From: HopDock: a probabilistic search algorithm for decoy sampling in protein-protein docking

PDB ID (Chains) HopDock (HH:MM) pyDock [4] (HH:MM) ClusPro [6] (HH:MM)
1C1Y (A,B) 04:00 01:30 00:53
1DS6 (A,B) 06:26 02:00 01.30
1TX4 (A,B) 10:42 02:30 01:00
1WWW (W,Y) 03:12 01:00 00:53
1FLT (V,Y) 02:36 00:30 00:53
1IKN (A,C) 06:00 01:30 01.24
1IKN (C,D) 03:54 00:18 01.24
1VCB (A,B) 01:04 00:33 00.54
1VCB (B,C) 01:36 01:08 00:58
1OHZ (A,B) 00:57 02:30 01:00
1T6G (A,C) 11:04 04:00 00:59
1ZHI (A,B) 03:17 04:45 00:59
2HQS (A,C) 12:07 01:00 01:00
1QAV (A,B) 01:05 01:30 00:40
1G4Y (B,R) 03:13 05:29 00:59
1CSE (E,I) 02:48 02:00 00:38
1G4U (R,S) 09:19 01:14 01:26
  1. Timing comparison (HH:MM) of HopDock to other web servers is presented on each of the seventeen systems studied here.