Table 5 Timing comparison.
From: HopDock: a probabilistic search algorithm for decoy sampling in protein-protein docking
PDB ID (Chains) | HopDock (HH:MM) | pyDock [4] (HH:MM) | ClusPro [6] (HH:MM) |
|---|---|---|---|
1C1Y (A,B) | 04:00 | 01:30 | 00:53 |
1DS6 (A,B) | 06:26 | 02:00 | 01.30 |
1TX4 (A,B) | 10:42 | 02:30 | 01:00 |
1WWW (W,Y) | 03:12 | 01:00 | 00:53 |
1FLT (V,Y) | 02:36 | 00:30 | 00:53 |
1IKN (A,C) | 06:00 | 01:30 | 01.24 |
1IKN (C,D) | 03:54 | 00:18 | 01.24 |
1VCB (A,B) | 01:04 | 00:33 | 00.54 |
1VCB (B,C) | 01:36 | 01:08 | 00:58 |
1OHZ (A,B) | 00:57 | 02:30 | 01:00 |
1T6G (A,C) | 11:04 | 04:00 | 00:59 |
1ZHI (A,B) | 03:17 | 04:45 | 00:59 |
2HQS (A,C) | 12:07 | 01:00 | 01:00 |
1QAV (A,B) | 01:05 | 01:30 | 00:40 |
1G4Y (B,R) | 03:13 | 05:29 | 00:59 |
1CSE (E,I) | 02:48 | 02:00 | 00:38 |
1G4U (R,S) | 09:19 | 01:14 | 01:26 |