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Table 3 The 36 APCs of the Cytochrome C Family Ranked by Standard Residual (where m = the number of patterns in the APC, and n = length of the APC)).

From: Ranking and compacting binding segments of protein families using aligned pattern clusters

 

APC (as regular expressions)

m

n

Quality

Coverage

Standard Residual

Binding Site

1

WGEDTLMEYLENPKKYIPGTKM IFAGIKKK

8

30

0.57

81

5.92E+16

Met62

2

MGDVEKGKKIFVQ[KR]CAQCH TVEKGGKHKTGPNL

19

33

0.43

119

5.04E+16

His18

3

QCH TVEKGGKHKTGPNLHGLFGRKTGQA

7

28

0.41

46

8.32E+14

His18

4

TLYDYLLNPKKYIPGTKM[VA]FPGLKKPQ

8

27

0.44

116

1.91E+14

Met62

5

GAGHK[QVT]GPNL[NH]GLFGRQSGTT

13

21

0.4

125

3.53E+10

 

6

GFSYTDANKNKGITWGE

8

17

0.41

66

6.33E+08

 

7

GEKIFKTKCAQCH TV

3

15

0.57

24

6.45E+07

His18

8

MGDVEKGKKIFVQKC

7

15

0.4

53

5.04E+07

 

9

GPNLHGLFGRKTGQA

4

15

0.43

46

4.37E+07

 

10

ERADLIAYLK[KE]ATNE

9

15

0.4

91

3.53E+07

 

11

HGLFGRKTGQAPGF

9

14

0.46

70

2.10E+07

 

12

IPGTKM AFGGLKK

4

13

0.42

136

9.06E+06

Met62

13

AANKNKGITWGE

4

12

0.5

54

1.60E+06

 

14

LHGLFGR[QK]SGTT

6

12

0.42

88

1.07E+06

 

15

AGYSYSAANKN

5

11

0.43

30

1.40E+05

 

16

TLYDYLLNP

2

9

0.56

29

2.69E+04

 

17

GQAPGFSY

2

8

0.5

27

5.57E+03

 

18

TKM VFAG

2

7

0.57

52

3.38E+03

Met62

19

GGKHKTG

2

7

0.43

64

2.94E+03

 

20

EKGKKIF

2

7

0.43

62

2.85E+03

 

21

FAGLKKP

3

7

0.48

57

2.62E+03

 

22

WGGGKIY

2

7

0.71

27

2.48E+03

 

23

FAGIKKK

2

7

0.43

51

2.34E+03

 

24

YLKKAT

1

6

1

29

1.19E+03

 

25

WGEDTL

1

6

1

25

1.02E+03

 

26

NCAACH

2

6

0.83

30

8.68E+02

His18

27

KGAGHK

2

6

0.83

26

7.52E+02

 

28

KGITW

1

5

1

49

4.46E+02

 

29

GFSYT

1

5

1

42

3.83E+02

 

30

FVQKC

1

5

1

39

3.55E+02

 

31

DANKN

1

5

1

34

3.10E+02

 

32

GYSYT

1

5

1

28

2.55E+02

 

33

AM PAF

1

5

1

24

2.19E+02

Met62

34

CH AGG

1

5

1

22

2.00E+02

His18

35

FKTRC

1

5

1

20

1.82E+02

 

36

LFEYL

1

5

1

20

1.82E+02

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