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Table 2 Proteins found in the MudPIT proteomics of the RIPA and urea fractions of the breast tumors analyzed in this work.

From: Sample prep for proteomics of breast cancer: proteomics and gene ontology reveal dramatic differences in protein solubilization preferences of radioimmunoprecipitation assay and urea lysis buffers

   

# Proteins

# Proteins_validated

 

Lysate

Default

• Xcorr (1,2,3): 1.90, 2.3, 3.75

• P(pro) : 0.001

• Δ Cn ≥ 0.1

Specimen

RIPA Buffer

Urea Buffer

  

T2-018_Tumor

*

 

33147

299

T2-018_Tumor

 

*

31828

155

T2-048_Tumor

*

 

27049

143

T2-048_Tumor

 

*

31329

261

T2-048_Tumor

*

 

28203

195

T2-048_Tumor

 

*

30816

122

T2-029_Tumor

*

 

27944

215

T2-029_Tumor

 

*

24963

358

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Proteome Science

ISSN: 1477-5956