Figure 2

The GOEx graphical user interface. A) A pie chart showing the distribution of the identified proteins as mapped onto selected cellular component GO terms is displayed on the right. The level of specificity was chosen according to the iDAG in the left panel. B) The GO terms related to the iDAG terms specified on the left are plotted according to the overrepresentation p- value and absolute fold change calculated for them from the identified proteins. The mouse is currently hovering over one term and its GO description is provided in a balloon. A detailed report table can be accessed by clicking on the Graph Data tab. C) Detailed information on the displayed results can be accessed by clicking on the Graph data tab. The table can be dynamically sorted by clicking on the column of interest. A detailed description of each column is addressed in The GOEx report table section. D) The automatic search pop-up window appears when one clicks on the Search all button in the main interface. The user can then select several stringency values to search for statistically overrepresented terms.