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Table 2 Outer membrane proteins of Flavobacterium columnare predicted by PSORTb.

From: Proteomic analysis of the fish pathogen Flavobacterium columnare

Protein name ORF # COG a) Approach/SN b)
Conserved hypothetical protein ORF02881 - 2-D LC
Conserved hypothetical protein ORF00226 - 2-D LC
Conserved hypothetical protein ORF01938 D 2-D LC
Conserved hypothetical protein ORF00224 - 2-D LC
Conserved hypothetical protein ORF02143 - 2-D LC
Conserved hypothetical protein ORF02328 R 2-D LC
Extracellular elastinolytic metalloproteinase ORF00198 - 2-D LC
Fjo24 ORF02628 - 2-D LC
Hypothetical protein ORF02366 - 2-D LC
Hypothetical protein ORF01273 - 2-D LC
Hypothetical protein ORF01272 - 2-D LC
Hypothetical protein ORF01485 - 2-D LC
Hypothetical protein ORF02042 P 2-D LC
Lipoprotein, putative ORF01143 - 2-D LC
Lipoprotein, putative ORF02619 - Both/166, 167
Omp assembly complex, YaeT protein ORF02858 M 2-D LC
OmpA ORF02005 M Both/132
OmpA ORF00341 M 2-D LC
OmpA family protein ORF00085 M 2-D LC
OmpA/MotB family ORF00937 M 2-D LC
OmpA/MotB family ORF01639 N 2-D LC
OmpA/MotB family ORF00225 M 2-DE/11, 12
Outer membrane efflux protein ORF00073 MN 2-D LC
Outer membrane insertion C- signal domain protein ORF00187 - 2-D LC
Peptidyl-prolyl cis-trans isomerase C ORF02829 O 2-D LC
Putative TonB-dependent receptor ORF00266 P 2-D LC
RagA protein, putative ORF00258 P 2-D LC
Secreted peptidase, family M23 ORF01434 M 2-D LC
Secreted protein ORF02176 - 2-DE/141
Snf2 family helicase ORF00742 KL 2-D LC
Tetratricopeptide repeat domain protein ORF01855 R 2-D LC
TonB-dependent outer membrane receptor ORF00779 P 2-D LC
TonB-dependent outer membrane receptor ORF02179 P 2-D LC
TonB-dependent outer membrane receptor ORF00147 P 2-D LC
TonB-dependent outer membrane receptor ORF02172 P 2-D LC
TonB-dependent outer membrane receptor ORF02232 P 2-D LC
TonB-dependent outer membrane receptor ORF01690 P 2-D LC
TonB-dependent outer membrane receptor, putative ORF00704 P 2-D LC
TonB-dependent outer membrane receptor, putative ORF02424 P 2-D LC
TonB-dependent receptor plug domain protein ORF01433 P 2-D LC
TonB-dependent receptor, putative ORF01511 P 2-D LC
Transcriptional regulator, AraC family protein ORF01879 R 2-D LC
  1. a) COG categories are as follows: M, cell wall/membrane/envelop biogenesis; D, cell cycle control, cell division, chromosome partitioning; P, inorganic ion transport and metabolism; S, function unknown; N, cell motility; R, general function prediction only; O, post-translational modification and protein turnover, chaperones; K, transcription; L, replication, recombination and repair; -, "No COGs".
  2. b) SN indicates spot number marked on the 2-DE image (Figure 1).