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Table 2 Outer membrane proteins of Flavobacterium columnare predicted by PSORTb.

From: Proteomic analysis of the fish pathogen Flavobacterium columnare

Protein name

ORF #

COG a)

Approach/SN b)

Conserved hypothetical protein

ORF02881

-

2-D LC

Conserved hypothetical protein

ORF00226

-

2-D LC

Conserved hypothetical protein

ORF01938

D

2-D LC

Conserved hypothetical protein

ORF00224

-

2-D LC

Conserved hypothetical protein

ORF02143

-

2-D LC

Conserved hypothetical protein

ORF02328

R

2-D LC

Extracellular elastinolytic metalloproteinase

ORF00198

-

2-D LC

Fjo24

ORF02628

-

2-D LC

Hypothetical protein

ORF02366

-

2-D LC

Hypothetical protein

ORF01273

-

2-D LC

Hypothetical protein

ORF01272

-

2-D LC

Hypothetical protein

ORF01485

-

2-D LC

Hypothetical protein

ORF02042

P

2-D LC

Lipoprotein, putative

ORF01143

-

2-D LC

Lipoprotein, putative

ORF02619

-

Both/166, 167

Omp assembly complex, YaeT protein

ORF02858

M

2-D LC

OmpA

ORF02005

M

Both/132

OmpA

ORF00341

M

2-D LC

OmpA family protein

ORF00085

M

2-D LC

OmpA/MotB family

ORF00937

M

2-D LC

OmpA/MotB family

ORF01639

N

2-D LC

OmpA/MotB family

ORF00225

M

2-DE/11, 12

Outer membrane efflux protein

ORF00073

MN

2-D LC

Outer membrane insertion C- signal domain protein

ORF00187

-

2-D LC

Peptidyl-prolyl cis-trans isomerase C

ORF02829

O

2-D LC

Putative TonB-dependent receptor

ORF00266

P

2-D LC

RagA protein, putative

ORF00258

P

2-D LC

Secreted peptidase, family M23

ORF01434

M

2-D LC

Secreted protein

ORF02176

-

2-DE/141

Snf2 family helicase

ORF00742

KL

2-D LC

Tetratricopeptide repeat domain protein

ORF01855

R

2-D LC

TonB-dependent outer membrane receptor

ORF00779

P

2-D LC

TonB-dependent outer membrane receptor

ORF02179

P

2-D LC

TonB-dependent outer membrane receptor

ORF00147

P

2-D LC

TonB-dependent outer membrane receptor

ORF02172

P

2-D LC

TonB-dependent outer membrane receptor

ORF02232

P

2-D LC

TonB-dependent outer membrane receptor

ORF01690

P

2-D LC

TonB-dependent outer membrane receptor, putative

ORF00704

P

2-D LC

TonB-dependent outer membrane receptor, putative

ORF02424

P

2-D LC

TonB-dependent receptor plug domain protein

ORF01433

P

2-D LC

TonB-dependent receptor, putative

ORF01511

P

2-D LC

Transcriptional regulator, AraC family protein

ORF01879

R

2-D LC

  1. a) COG categories are as follows: M, cell wall/membrane/envelop biogenesis; D, cell cycle control, cell division, chromosome partitioning; P, inorganic ion transport and metabolism; S, function unknown; N, cell motility; R, general function prediction only; O, post-translational modification and protein turnover, chaperones; K, transcription; L, replication, recombination and repair; -, "No COGs".
  2. b) SN indicates spot number marked on the 2-DE image (Figure 1).