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Table 2 Proteins whose abundance was significantly more abundant in SD than LD at 7 days.

From: Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapevines

SSP SD/LD Pval Th Mr Exp Mr Th Pi Exp Pi Pep M score % Cov Function
SSP3313 5.39 0.01 39 43 5.4 5.3 19 (9) 768 70 Glutamine synthetase
SSP8826 10.7 0.04 115 95 6.9 6.2 34 (13) 797 37 Glycine dehydrogenase
SSP6605 16.6 0.00 64 75 5.7 5.8 29 (15) 651 38 Lysyl-tRNA synthetase
SSP8301 2.90 0.02 41 41 6.3 6.1 31 (17) 921 68 Alpha-1,4-glucan-protein synthase 1
SSP4719 22.8 0.00 83 69 6.8 5.4 33 (13) 707 36 Beta-D-xylosidase
SSP2209 3.15 0.03 29 36 5.3 5.1 15 (9) 511 48 L-galactose 1-phosphate phosphatase
SSP5502 3.18 0.04 52 58 5.1 5.5 31 (14) 965 69 ATP synthase beta chain 2, mitochondrial*
SSP4309 15.3 0.03 37 40 6.3 5.4 8 (6) 250 26 ATP synthase gamma chain 1t
SSP0008 5.62 0.00 28 25 5.1 4.8 9 (8) 537 44 Light-harvesting complex II LHCB1
SSP2101 4.25 0.02 27 26 5.2 5.0 10 (5) 236 36 Light-harvesting complex II LHCB1
SSP1008 4.55 0.00 28 25 5.7 4.9 7 (6) 290 19 Light-harvesting complex II LHCB2
SSP1308 3.45 0.02 52 46 5.5 4.9 26 (3) 304 44 RUBISCO activase, chloroplast
SSP4814 3.54 0.02 102 87 6.1 5.5 20 (9) 545 22 Lipoxygenase (LOX2)*
SSP2505 6.08 0.01 64 63 5.8 5.0 10 (5) 194 23 Chaperonin*
SSP0707 5.13 0.04 92 90 5.0 4.8 21 (8) 249 25 Endoplasmin precursor (GRP94)
SSP1701 5.59 0.05 92 89 5.0 4.9 32 (19) 990 37 Endoplasmin precursor (GRP94)
SSP1618 5.01 0.03 68 66 5.7 5.0 21 (11) 507 40 60 kDa chaperonin beta subunit
SSP1102 19.0 0.01 32 29 7.8 4.8 9 (7) 421 43 HrBP1-1 PAP/fibrillin family
SSP2404 4.95 0.01 50 53 4.9 5.0 31 (17) 1150 73 Tubulin alpha-3 chain
SSP0227 5.06 0.01 19 34 5.6 4.8 12 (8) 255 49 14-3-3 protein GF14 iota (GRF12)*
SSP0109 5.40 0.00 29 30 4.8 4.7 23 (12) 662 68 14-3-3 protein GF14 omega (GRF2)
SSP2708 2.67 0.01 90 87 5.1 5.1 39 (18) 1170 55 Cell division cycle protein 48
SSP6608 4.43 0.04 82 78 5.8 5.8 35 (14) 398 47 N-ethylmaleimide sensitive factor*
SSP1319 9.87 0.00 4 43 4.8 4.8 11 (4) 186 29 Eukaryotic initiation factor 3H1 subunit
SSP4815 9.07 0.00 99 85 6.1 5.5 52 (17) 1110 45 ATP-dependent Clp protease ATP-binding sub (CD4B)
SSP4603 3.80 0.04 71 76 5.2 5.4 29 (10) 518 40 Heat shock cognate 70 kDa protein 1
SSP2604 3.47 0.00 71 72 5.2 5.1 39 (16) 1080 47 Heat shock cognate 70 kDa protein 1
SSP1617 4.02 0.02 53 63 5.0 5.0 17 (4) 258 37 RNA recognition motif (RRM)-containing protein
SSP0018 65.8 0.01 19 17 4.5 4.5 8 (5) 247 32 Translationally-controlled tumor protein
SSP4008 10.1 0.00   21   5.5     
  1. SSP, standard spot number; SD/LD, normalized spot volume in the SD divided by the normalized spot volume in the LD, from 6 different plants; Pval, p-value; Th M r, theoretical molecular mass; Exp M r, experimental molecular mass; Th p I, theoretical pI; Exp p I, experimental pI; Pep, number of peptides mass and in ( ) the number of MS/MS ions matching the query; M score, MOWSE score; % Cov, percentage of coverage; Function, description of protein identity (*spots with multiple positive identifications)