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Table 3 Proteins whose abundance was significantly more abundant in LD than SD at 28 days.

From: Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapevines

SSP SD/LD Pval Th Mr Exp Mr Th Pi Exp Pi Pep M score % Cov Function
SSP7619 0.11 0.00 48 65 6.7 5.9 12 (3) 113 30 2-isopropylmalate synthase B
SSP7613 0.24 0.00 61 41 7.0 5.9 18 (6) 247 30 Dihydroxy-acid dehydratase*
SSP6614 0.19 0.04 63 63 6.4 5.7 14 (7) 366 21 Ketol-acid reductoisomerase*
SSP6517 0.35 0.00 63 61 6.4 5.8 17 (11) 770 33 Ketol-acid reductoisomerase
SSP6512 0.38 0.00 55 53 7.6 5.7 22 (8) 385 35 3-P-shikimate 1-carboxyvinyltransferase, chloroplast
SSP8723 0.41 0.00 85 79 6.1 6.3 38 (14) 908 52 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase
SSP8706 0.12 0.05 85 83 6.1 6.1 33 (12) 701 39 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase
SSP9702 0.38 0.01 85 83 6.1 6.4 25 (13) 783 39 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase
SSP5408 0.37 0.01 43 51 5.7 5.7 16 (8) 489 44 S-adenosylmethionine synthetase 1 (SAM1)
SSP6425 0.03 0.00 43 49 5.6 5.7 9 (7) 449 19 S-adenosylmethionine synthetase 1 (SAM1)
SSP5415 0.01 0.00 43 50 5.6 5.5 33 (9) 512 57 S-adenosylmethionine synthetase 1 (SAM1)
SSP5604 0.38 0.00 60 66 5.4 5.5 23 (14) 908 54 2,3-bis-P-glycerate-independent P-glycerate mutase
SSP5611 0.44 0.02 60 67 5.4 5.6 22 (12) 607 54 2,3-bis-P-glycerate-independent P-glycerate mutase
SSP7328 0.48 0.04 38 43 6.6 6.0 22 (9) 454 53 Glyceraldehyde-3-P dehydrogenase A, chloroplast*
SSP6405 0.11 0.01 42 45 6.3 5.7 13 (6) 346 42 Phosphoglycerate kinase, cytosolic*
SSP2307 0.33 0.02 36 41 5.0 5.1 11 (6) 175 32 Pyruvate dehydrogenase E1 sub beta*
SSP8414 0.25 0.02 46 51 6.0 6.3 28 (9) 480 54 Isocitrate dehydrogenase, chloroplast
SSP8316 0.36 0.01 35 40 6.2 6.1 21 (14) 865 65 Malate dehydrogenase, cytosolic
SSP5206 0.19 0.00 32 33 5.5 5.6 29 (3) 330 70 Phosphogluconate dehydrogenase
SSP4314 0.15 0.01 44 41 6.3 5.5 11 (6) 159 26 Transketolase
SSP8707 0.1 0.00 67 75 6.1 6.1 32 (16) 928 45 Transketolase, chloroplast
SSP8602 0.37 0.00 67 75 6.1 6.1 30 (12) 659 46 Transketolase, chloroplast
SSP7207 0.22 0.00 28 31 5.6 5.9 23 (4) 306 60 Phosphomannomutase
SSP3201 0.23 0.00 35 39 5.1 5.2 24 (7) 614 72 Fructokinase-1
SSP2205 0.46 0.03 35 39 5.1 5.1 20 (11) 656 61 Fructokinase-1*
SSP7401 0.09 0.00 43 47 5.9 5.8 20 (7) 349 51 GDP-mannose 3,5-epimerase 1
SSP7708 0.27 0.03 92 83 6.0 6.0 54 (16) 824 45 Sucrose synthase
SSP3502 0.17 0.00 59 56 6.6 5.2 21 (7) 355 45 ATP synthase beta chain 2, mitochondrial*
SSP4305 0.42 0.00 37 42 6.3 5.4 13 (3) 304 31 ATP synthase gamma chain 1t
SSP7114 0.14 0.02 25 26 5.8 5.9 8 (4) 203 32 Inorganic pyrophosphatase
SSP1519 0.42 0.01 54 60 5.0 5.0 18 (6) 247 43 V-type H+-transporting ATPase subunit B
SSP5708 0.45 0.00 92 84 5.5 5.6 35 (12) 844 46 Phospholipase D alpha 1*
SSP6423 0.05 0.02 54 49 7.0 5.8 18 (8) 343 32 Sulfate adenylyltransferase*
SSP7217 0.08 0.00 35 38 6.0 5.9 10 (6) 295 40 Thioredoxin reductase 2
SSP7313 0.25 0.00 37 41 5.8 5.9 12 (10) 517 28 Anthocyanidin reductase
SSP7325 0.11 0.00 26 42 7.6 5.9 7 (4) 156 35 Anthocyanidin reductase
SSP2120 0.28 0.00 25 27 5.3 5.2 9 (6) 428 59 Chalcone isomerase*
SSP6205 0.46 0.00 35 39 5.8 5.7 21 (14) 831 60 Cinnamyl alcohol dehydrogenase
SSP6413 0.11 0.00 40 48 5.6 5.8 17 (5) 447 46 Leucoanthocyanidin dioxgenase
SSP2406 0.3 0.02 50 53 5.0 5.1 23 (13) 705 53 Tubulin alpha chain
SSP2516 0.42 0.00 50 53 5.0 5.1 21 (13) 721 48 Tubulin alpha chain
SSP2404 0.15 0.01 50 53 4.9 5.0 31 (17) 1150 73 Tubulin alpha-3 chain
SSP1516 0.05 0.01 50 55 4.8 4.9 24 (5) 250 35 Tubulin beta-7 chain
SSP6104 0.25 0.00 27 25 8.8 5.7 8 (5) 281 44 Chaperonin 21, Chloroplast
SSP6609 0.27 0.01 57 65 5.6 5.7 24 (11) 361 54 Chaperonin containing TCP1, beta subunit
SSP5617 0.11 0.01 59 65 5.7 5.6 22 (5) 238 27 Chaperonin containing TCP1, epsilon subunit*
SSP8609 0.17 0.00 61 64 6.0 6.1 32 (9) 458 55 Chaperonin containing TCP1, eta subunit*
SSP6606 0.25 0.00 61 68 5.6 5.7 32 (13) 548 55 Chaperonin containing TCP1, gamma sb
SSP4517 0.31 0.00 59 64 5.5 5.5 20 (7) 275 46 Chaperonin containing TCP1, theta sb
SSP8605 0.48 0.00 59 63 6.0 6.1 42 (13) 566 59 Chaperonin containing TCP1, zeta subunit
SSP1702 0.15 0.00 92 89 5.0 4.9 26 (18) 517 30 Endoplasmin precursor GRP94
SSP3012 0.03 0.00 17 18 5.2 5.2 14 (7) 573 93 Peroxiredoxin-5
SSP8103 0.43 0.02 27 27 6.6 6.1 6 (3) 125 23 Proteasome 20 S alpha subunit C
SSP7108 0.11 0.00 27 26 6.1 6.0 26 (7) 407 61 Proteasome 20 S alpha subunit G
SSP2008 0.36 0.03 22 22 5.5 5.1 9 (5) 285 56 Proteasome 20 S beta subunit C1
SSP6014 0.35 0.00 22 22 5.9 5.8 21 (11) 623 74 Proteasome 20 S beta subunit D
SSP7520 0.09 0.01 47 53 5.9 5.9 10 (6) 141 25 Proteasome 26 S regulatory subunit RPN6
SSP0019 0.04 0.02 20 14 5.8 4.7 7 (3) 191 35 Ribosomal protein L12-1, chloroplast
SSP4212 0.17 0.00 37 37 5.6 5.5 3 (2) 82.5 12 Serine carboxypeptidase II
SSP2513 0.5 0.00 68 63 5.7 5.1 19 (12) 640 40 60 kDa chaperonin beta subunit
SSP2605 0.39 0.04 68 65 5.7 5.1 19 (10) 558 39 60 kDa chaperonin beta subunit
SSP0215 0.26 0.03 29 31 4.8 4.8 15 (7) 347 52 14-3-3 protein GF14 omega (GRF2)
SSP0216 0.12 0.01 29 30 4.8 4.7 23 (10) 554 51 14-3-3 protein GF14 omega (GRF2)
SSP0221 0.1 0.00 29 31 4.7 4.6 19 (8) 460 60 14-3-3 protein GF14 omega (GRF2)
SSP0211 0.13 0.00 29 31 4.7 4.7 24 (10) 562 59 14-3-3 protein GF14 omega (GRF2)
SSP3712 0.24 0.01 90 85 5.1 5.2 36 (17) 1080 47 Cell division cycle protein 48
SSP4514 0.35 0.00 50 54 5.4 5.5 22 (6) 324 42 RAB GDP dissociation inhibitor 1 ATGD1*
SSP1611 0.08 0.01 65 69 4.9 5.0 21 (7) 302 40 Ser/thr-prot phosphatase 2A 65 kDa reg sub A
SSP2701 0.29 0.00 65 81 5.0 5.0 28 (12) 793 42 heat shock protein 81-4
SSP6417 0.34 0.00 48 52 5.8 5.8 17 (8) 272 41 UVB-resistance protein UVR8*
SSP0204 0.31 0.02 28 35 4.5 4.5 12 (7) 426 45 elongation factor 1-beta
SSP1201 0.25 0.02 24 31 4.8 4.8 9 (5) 318 57 Elongation factor 1-beta 1
SSP7701 0.32 0.00 56 87 6.1 5.9 13 (7) 282 29 Elongation factor EF-2*
SSP4412 0.49 0.01 47 50 5.5 5.4 35 (15) 622 55 eukaryotic translation initiation factor 4A-1
SSP4408 0.38 0.00 47 52 5.5 5.4 32 (7) 215 50 eukaryotic translation initiation factor 4A-1
SSP4402 0.39 0.01 47 51 5.4 5.4 33 (9) 368 62 eukaryotic translation initiation factor 4A-2
SSP3603 0.32 0.03 71 72 5.2 5.2 29 (11) 464 42 Heat shock cognate 70 kDa
SSP1603 0.44 0.03 57 73 4.7 4.8 28 (14) 1240 52 Heat shock protein 70 kDa
SSP3122 0.06 0.01 27 28 5.1 5.3 13 (3) 199 65 Coatomer subunit epsilon
SSP6722 0.02 0.05 84 82 5.8 5.7 26 (9) 392 35 Protein transport protein Sec23A
SSP7204 0.19 0.00 33 31 5.8 5.9 14 (3) 229 42 Protein transport SEC13
SSP0101 0.3 0.00 31 27 5.4 4.6 7 (7) 206 23 RNA-binding protein cp29
SSP5221 0.11 0.02 33 37 5.6 5.6 7 (5) 135 31 Carboxyesterase 5 CXE5
SSP1707 0.06 0.02 90 84 4.9 4.8 41 (12) 822 46 Embryo defective 1956
SSP0304 0.45 0.00 35 42 4.7 4.6 11 (8) 485 39 Late embryogenesis abundant
SSP6116 0.16 0.04 27 29 5.5 5.7 11 (3) 219 41 Stem-specific protein TSJT1
SSP0017 0.03 0.04 19 17 4.5 4.6 4 (3) 117 20 Translationally-controlled tumor protein
SSP4317 0.08 0.00 40 43 5.8 5.4 20 (10) 419 47 Unknown protein*
SSP9604 0.21 0.00   50   6.4     
SSP8425 0.12 0.00   49   6.3     
SSP0120 0.07 0.00   27   4.7     
SSP0132 0.46 0.03   27   4.6     
SSP6711 0.23 0.03   88   5.7     
  1. SSP, standard spot number; SD/LD, normalized spot volume in the SD divided by the normalized spot volume in the LD, from 6 different plants; Pval, p-value; Th M r, theoretical molecular mass; Exp M r, experimental molecular mass; Th p I, theoretical pI; Exp p I, experimental pI; Pep, number of peptides mass and in ( ) the number of MS/MS ions matching the query; M score, MOWSE score; % Cov, percentage of coverage; Function, description of protein identity (*spots with multiple positive identifications)