Table 3 Proteins whose abundance was significantly more abundant in LD than SD at 28 days.
SSP | SD/LD | Pval | Th Mr | Exp Mr | Th Pi | Exp Pi | Pep | M score | % Cov | Function |
|---|---|---|---|---|---|---|---|---|---|---|
SSP7619 | 0.11 | 0.00 | 48 | 65 | 6.7 | 5.9 | 12 (3) | 113 | 30 | 2-isopropylmalate synthase B |
SSP7613 | 0.24 | 0.00 | 61 | 41 | 7.0 | 5.9 | 18 (6) | 247 | 30 | Dihydroxy-acid dehydratase* |
SSP6614 | 0.19 | 0.04 | 63 | 63 | 6.4 | 5.7 | 14 (7) | 366 | 21 | Ketol-acid reductoisomerase* |
SSP6517 | 0.35 | 0.00 | 63 | 61 | 6.4 | 5.8 | 17 (11) | 770 | 33 | Ketol-acid reductoisomerase |
SSP6512 | 0.38 | 0.00 | 55 | 53 | 7.6 | 5.7 | 22 (8) | 385 | 35 | 3-P-shikimate 1-carboxyvinyltransferase, chloroplast |
SSP8723 | 0.41 | 0.00 | 85 | 79 | 6.1 | 6.3 | 38 (14) | 908 | 52 | 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase |
SSP8706 | 0.12 | 0.05 | 85 | 83 | 6.1 | 6.1 | 33 (12) | 701 | 39 | 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase |
SSP9702 | 0.38 | 0.01 | 85 | 83 | 6.1 | 6.4 | 25 (13) | 783 | 39 | 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase |
SSP5408 | 0.37 | 0.01 | 43 | 51 | 5.7 | 5.7 | 16 (8) | 489 | 44 | S-adenosylmethionine synthetase 1 (SAM1) |
SSP6425 | 0.03 | 0.00 | 43 | 49 | 5.6 | 5.7 | 9 (7) | 449 | 19 | S-adenosylmethionine synthetase 1 (SAM1) |
SSP5415 | 0.01 | 0.00 | 43 | 50 | 5.6 | 5.5 | 33 (9) | 512 | 57 | S-adenosylmethionine synthetase 1 (SAM1) |
SSP5604 | 0.38 | 0.00 | 60 | 66 | 5.4 | 5.5 | 23 (14) | 908 | 54 | 2,3-bis-P-glycerate-independent P-glycerate mutase |
SSP5611 | 0.44 | 0.02 | 60 | 67 | 5.4 | 5.6 | 22 (12) | 607 | 54 | 2,3-bis-P-glycerate-independent P-glycerate mutase |
SSP7328 | 0.48 | 0.04 | 38 | 43 | 6.6 | 6.0 | 22 (9) | 454 | 53 | Glyceraldehyde-3-P dehydrogenase A, chloroplast* |
SSP6405 | 0.11 | 0.01 | 42 | 45 | 6.3 | 5.7 | 13 (6) | 346 | 42 | Phosphoglycerate kinase, cytosolic* |
SSP2307 | 0.33 | 0.02 | 36 | 41 | 5.0 | 5.1 | 11 (6) | 175 | 32 | Pyruvate dehydrogenase E1 sub beta* |
SSP8414 | 0.25 | 0.02 | 46 | 51 | 6.0 | 6.3 | 28 (9) | 480 | 54 | Isocitrate dehydrogenase, chloroplast |
SSP8316 | 0.36 | 0.01 | 35 | 40 | 6.2 | 6.1 | 21 (14) | 865 | 65 | Malate dehydrogenase, cytosolic |
SSP5206 | 0.19 | 0.00 | 32 | 33 | 5.5 | 5.6 | 29 (3) | 330 | 70 | Phosphogluconate dehydrogenase |
SSP4314 | 0.15 | 0.01 | 44 | 41 | 6.3 | 5.5 | 11 (6) | 159 | 26 | Transketolase |
SSP8707 | 0.1 | 0.00 | 67 | 75 | 6.1 | 6.1 | 32 (16) | 928 | 45 | Transketolase, chloroplast |
SSP8602 | 0.37 | 0.00 | 67 | 75 | 6.1 | 6.1 | 30 (12) | 659 | 46 | Transketolase, chloroplast |
SSP7207 | 0.22 | 0.00 | 28 | 31 | 5.6 | 5.9 | 23 (4) | 306 | 60 | Phosphomannomutase |
SSP3201 | 0.23 | 0.00 | 35 | 39 | 5.1 | 5.2 | 24 (7) | 614 | 72 | Fructokinase-1 |
SSP2205 | 0.46 | 0.03 | 35 | 39 | 5.1 | 5.1 | 20 (11) | 656 | 61 | Fructokinase-1* |
SSP7401 | 0.09 | 0.00 | 43 | 47 | 5.9 | 5.8 | 20 (7) | 349 | 51 | GDP-mannose 3,5-epimerase 1 |
SSP7708 | 0.27 | 0.03 | 92 | 83 | 6.0 | 6.0 | 54 (16) | 824 | 45 | Sucrose synthase |
SSP3502 | 0.17 | 0.00 | 59 | 56 | 6.6 | 5.2 | 21 (7) | 355 | 45 | ATP synthase beta chain 2, mitochondrial* |
SSP4305 | 0.42 | 0.00 | 37 | 42 | 6.3 | 5.4 | 13 (3) | 304 | 31 | ATP synthase gamma chain 1t |
SSP7114 | 0.14 | 0.02 | 25 | 26 | 5.8 | 5.9 | 8 (4) | 203 | 32 | Inorganic pyrophosphatase |
SSP1519 | 0.42 | 0.01 | 54 | 60 | 5.0 | 5.0 | 18 (6) | 247 | 43 | V-type H+-transporting ATPase subunit B |
SSP5708 | 0.45 | 0.00 | 92 | 84 | 5.5 | 5.6 | 35 (12) | 844 | 46 | Phospholipase D alpha 1* |
SSP6423 | 0.05 | 0.02 | 54 | 49 | 7.0 | 5.8 | 18 (8) | 343 | 32 | Sulfate adenylyltransferase* |
SSP7217 | 0.08 | 0.00 | 35 | 38 | 6.0 | 5.9 | 10 (6) | 295 | 40 | Thioredoxin reductase 2 |
SSP7313 | 0.25 | 0.00 | 37 | 41 | 5.8 | 5.9 | 12 (10) | 517 | 28 | Anthocyanidin reductase |
SSP7325 | 0.11 | 0.00 | 26 | 42 | 7.6 | 5.9 | 7 (4) | 156 | 35 | Anthocyanidin reductase |
SSP2120 | 0.28 | 0.00 | 25 | 27 | 5.3 | 5.2 | 9 (6) | 428 | 59 | Chalcone isomerase* |
SSP6205 | 0.46 | 0.00 | 35 | 39 | 5.8 | 5.7 | 21 (14) | 831 | 60 | Cinnamyl alcohol dehydrogenase |
SSP6413 | 0.11 | 0.00 | 40 | 48 | 5.6 | 5.8 | 17 (5) | 447 | 46 | Leucoanthocyanidin dioxgenase |
SSP2406 | 0.3 | 0.02 | 50 | 53 | 5.0 | 5.1 | 23 (13) | 705 | 53 | Tubulin alpha chain |
SSP2516 | 0.42 | 0.00 | 50 | 53 | 5.0 | 5.1 | 21 (13) | 721 | 48 | Tubulin alpha chain |
SSP2404 | 0.15 | 0.01 | 50 | 53 | 4.9 | 5.0 | 31 (17) | 1150 | 73 | Tubulin alpha-3 chain |
SSP1516 | 0.05 | 0.01 | 50 | 55 | 4.8 | 4.9 | 24 (5) | 250 | 35 | Tubulin beta-7 chain |
SSP6104 | 0.25 | 0.00 | 27 | 25 | 8.8 | 5.7 | 8 (5) | 281 | 44 | Chaperonin 21, Chloroplast |
SSP6609 | 0.27 | 0.01 | 57 | 65 | 5.6 | 5.7 | 24 (11) | 361 | 54 | Chaperonin containing TCP1, beta subunit |
SSP5617 | 0.11 | 0.01 | 59 | 65 | 5.7 | 5.6 | 22 (5) | 238 | 27 | Chaperonin containing TCP1, epsilon subunit* |
SSP8609 | 0.17 | 0.00 | 61 | 64 | 6.0 | 6.1 | 32 (9) | 458 | 55 | Chaperonin containing TCP1, eta subunit* |
SSP6606 | 0.25 | 0.00 | 61 | 68 | 5.6 | 5.7 | 32 (13) | 548 | 55 | Chaperonin containing TCP1, gamma sb |
SSP4517 | 0.31 | 0.00 | 59 | 64 | 5.5 | 5.5 | 20 (7) | 275 | 46 | Chaperonin containing TCP1, theta sb |
SSP8605 | 0.48 | 0.00 | 59 | 63 | 6.0 | 6.1 | 42 (13) | 566 | 59 | Chaperonin containing TCP1, zeta subunit |
SSP1702 | 0.15 | 0.00 | 92 | 89 | 5.0 | 4.9 | 26 (18) | 517 | 30 | Endoplasmin precursor GRP94 |
SSP3012 | 0.03 | 0.00 | 17 | 18 | 5.2 | 5.2 | 14 (7) | 573 | 93 | Peroxiredoxin-5 |
SSP8103 | 0.43 | 0.02 | 27 | 27 | 6.6 | 6.1 | 6 (3) | 125 | 23 | Proteasome 20 S alpha subunit C |
SSP7108 | 0.11 | 0.00 | 27 | 26 | 6.1 | 6.0 | 26 (7) | 407 | 61 | Proteasome 20 S alpha subunit G |
SSP2008 | 0.36 | 0.03 | 22 | 22 | 5.5 | 5.1 | 9 (5) | 285 | 56 | Proteasome 20 S beta subunit C1 |
SSP6014 | 0.35 | 0.00 | 22 | 22 | 5.9 | 5.8 | 21 (11) | 623 | 74 | Proteasome 20 S beta subunit D |
SSP7520 | 0.09 | 0.01 | 47 | 53 | 5.9 | 5.9 | 10 (6) | 141 | 25 | Proteasome 26 S regulatory subunit RPN6 |
SSP0019 | 0.04 | 0.02 | 20 | 14 | 5.8 | 4.7 | 7 (3) | 191 | 35 | Ribosomal protein L12-1, chloroplast |
SSP4212 | 0.17 | 0.00 | 37 | 37 | 5.6 | 5.5 | 3 (2) | 82.5 | 12 | Serine carboxypeptidase II |
SSP2513 | 0.5 | 0.00 | 68 | 63 | 5.7 | 5.1 | 19 (12) | 640 | 40 | 60 kDa chaperonin beta subunit |
SSP2605 | 0.39 | 0.04 | 68 | 65 | 5.7 | 5.1 | 19 (10) | 558 | 39 | 60 kDa chaperonin beta subunit |
SSP0215 | 0.26 | 0.03 | 29 | 31 | 4.8 | 4.8 | 15 (7) | 347 | 52 | 14-3-3 protein GF14 omega (GRF2) |
SSP0216 | 0.12 | 0.01 | 29 | 30 | 4.8 | 4.7 | 23 (10) | 554 | 51 | 14-3-3 protein GF14 omega (GRF2) |
SSP0221 | 0.1 | 0.00 | 29 | 31 | 4.7 | 4.6 | 19 (8) | 460 | 60 | 14-3-3 protein GF14 omega (GRF2) |
SSP0211 | 0.13 | 0.00 | 29 | 31 | 4.7 | 4.7 | 24 (10) | 562 | 59 | 14-3-3 protein GF14 omega (GRF2) |
SSP3712 | 0.24 | 0.01 | 90 | 85 | 5.1 | 5.2 | 36 (17) | 1080 | 47 | Cell division cycle protein 48 |
SSP4514 | 0.35 | 0.00 | 50 | 54 | 5.4 | 5.5 | 22 (6) | 324 | 42 | RAB GDP dissociation inhibitor 1 ATGD1* |
SSP1611 | 0.08 | 0.01 | 65 | 69 | 4.9 | 5.0 | 21 (7) | 302 | 40 | Ser/thr-prot phosphatase 2A 65 kDa reg sub A |
SSP2701 | 0.29 | 0.00 | 65 | 81 | 5.0 | 5.0 | 28 (12) | 793 | 42 | heat shock protein 81-4 |
SSP6417 | 0.34 | 0.00 | 48 | 52 | 5.8 | 5.8 | 17 (8) | 272 | 41 | UVB-resistance protein UVR8* |
SSP0204 | 0.31 | 0.02 | 28 | 35 | 4.5 | 4.5 | 12 (7) | 426 | 45 | elongation factor 1-beta |
SSP1201 | 0.25 | 0.02 | 24 | 31 | 4.8 | 4.8 | 9 (5) | 318 | 57 | Elongation factor 1-beta 1 |
SSP7701 | 0.32 | 0.00 | 56 | 87 | 6.1 | 5.9 | 13 (7) | 282 | 29 | Elongation factor EF-2* |
SSP4412 | 0.49 | 0.01 | 47 | 50 | 5.5 | 5.4 | 35 (15) | 622 | 55 | eukaryotic translation initiation factor 4A-1 |
SSP4408 | 0.38 | 0.00 | 47 | 52 | 5.5 | 5.4 | 32 (7) | 215 | 50 | eukaryotic translation initiation factor 4A-1 |
SSP4402 | 0.39 | 0.01 | 47 | 51 | 5.4 | 5.4 | 33 (9) | 368 | 62 | eukaryotic translation initiation factor 4A-2 |
SSP3603 | 0.32 | 0.03 | 71 | 72 | 5.2 | 5.2 | 29 (11) | 464 | 42 | Heat shock cognate 70 kDa |
SSP1603 | 0.44 | 0.03 | 57 | 73 | 4.7 | 4.8 | 28 (14) | 1240 | 52 | Heat shock protein 70 kDa |
SSP3122 | 0.06 | 0.01 | 27 | 28 | 5.1 | 5.3 | 13 (3) | 199 | 65 | Coatomer subunit epsilon |
SSP6722 | 0.02 | 0.05 | 84 | 82 | 5.8 | 5.7 | 26 (9) | 392 | 35 | Protein transport protein Sec23A |
SSP7204 | 0.19 | 0.00 | 33 | 31 | 5.8 | 5.9 | 14 (3) | 229 | 42 | Protein transport SEC13 |
SSP0101 | 0.3 | 0.00 | 31 | 27 | 5.4 | 4.6 | 7 (7) | 206 | 23 | RNA-binding protein cp29 |
SSP5221 | 0.11 | 0.02 | 33 | 37 | 5.6 | 5.6 | 7 (5) | 135 | 31 | Carboxyesterase 5 CXE5 |
SSP1707 | 0.06 | 0.02 | 90 | 84 | 4.9 | 4.8 | 41 (12) | 822 | 46 | Embryo defective 1956 |
SSP0304 | 0.45 | 0.00 | 35 | 42 | 4.7 | 4.6 | 11 (8) | 485 | 39 | Late embryogenesis abundant |
SSP6116 | 0.16 | 0.04 | 27 | 29 | 5.5 | 5.7 | 11 (3) | 219 | 41 | Stem-specific protein TSJT1 |
SSP0017 | 0.03 | 0.04 | 19 | 17 | 4.5 | 4.6 | 4 (3) | 117 | 20 | Translationally-controlled tumor protein |
SSP4317 | 0.08 | 0.00 | 40 | 43 | 5.8 | 5.4 | 20 (10) | 419 | 47 | Unknown protein* |
SSP9604 | 0.21 | 0.00 | Â | 50 | Â | 6.4 | Â | Â | Â | Â |
SSP8425 | 0.12 | 0.00 | Â | 49 | Â | 6.3 | Â | Â | Â | Â |
SSP0120 | 0.07 | 0.00 | Â | 27 | Â | 4.7 | Â | Â | Â | Â |
SSP0132 | 0.46 | 0.03 | Â | 27 | Â | 4.6 | Â | Â | Â | Â |
SSP6711 | 0.23 | 0.03 | Â | 88 | Â | 5.7 | Â | Â | Â | Â |