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Table 4 Proteins whose abundance was significantly more abundant in SD than LD at 28 days.

From: Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapevines

SSP

SD/LD

Pval

Th

Mr

Exp

Mr

Th

Pi

Exp

Pi

Pep

M

score

%

Cov

Function

SSP6408

4.15

0.00

37

46

6.6

5.7

9 (6)

268

35

Fumarylacetoacetase*

SSP5407

17.8

0.00

48

46

7.1

5.7

7 (5)

193

15

Glutamine synthetase

SSP8713

2.69

0.01

115

92

6.9

6.2

35 (13)

723

36

Glycine dehydrogenase

SSP7412

3.21

0.00

48

49

5.9

6.0

25 (11)

523

48

Methylthioribose kinase

SSP6412

3.93

0.01

48

48

7.6

5.8

13 (6)

205

29

Glyceraldehyde-3-P dehydrogenase B, chloroplast*

SSP7317

3.4

0.00

43

41

8.1

6.0

18 (11)

781

45

Fructose-bisphosphate aldolase, chloroplast*

SSP5218

3.49

0.00

32

36

5.5

5.6

21 (9)

446

57

Phosphogluconate dehydrogenase

SSP7710

3.29

0.02

67

76

5.9

5.9

33 (10)

579

55

Transketolase, chloroplast

SSP5106

2.99

0.00

29

26

8.8

5.6

12 (4)

159

31

Dehydroascorbate reductase

SSP7406

4.28

0.00

47

47

6.3

5.9

24 (12)

829

59

Monodehydroascorbate reductase*

SSP4401

9.27

0.00

56

53

6.5

5.4

31 (10)

674

53

Glucose-1-P adenylyltransferase small sub, chloroplast

SSP5219

5.62

0.00

33

37

5.5

5.6

16 (7)

331

42

Lactoylglutathione lyase

SSP2202

2.96

0.00

40

33

6.2

5.0

10 (6)

203

24

phosphoglycolate phosphatase

SSP3111

6.23

0.00

35

30

8.7

5.2

6 (5)

136

21

phosphoglycolate phosphatase

SSP3501

8.93

0.00

55

62

5.3

5.2

22 (15)

752

39

ATP synthase CF1 alpha subunit

SSP2515

4.63

0.00

55

63

5.3

5.1

31 (16)

905

43

ATP synthase CF1 alpha subunit

SSP5314

5.84

0.00

33

41

5.7

5.6

20 (13)

677

79

Quinone oxidoreductase, chloroplast

SSP7321

8.32

0.00

33

40

5.7

5.9

10 (3)

173

49

Quinone oxidoreductase, chloroplast

SSP5009

3

0.01

21

16

6.9

5.6

3 (3)

220

19

Cyt B6-F complex iron-sulfur sub, PETC

SSP2206

2.82

0.01

35

31

6.1

5.1

11 (7)

268

27

Photosystem II PsbO protein

SSP1121

5

0.00

35

30

7.6

5.0

7 (3)

86

23

Photosystem II PsbO protein

SSP1116

3.02

0.02

35

31

7.6

5.0

8 (4)

100

28

Photosystem II PsbO protein

SSP3010

5.36

0.00

28

23

8.3

5.4

8 (6)

400

31

Photosystem II PsbP protein

SSP1006

12.1

0.00

26

22

5.8

5.0

5 (3)

125

18

Light-harvesting complex I LHCA1

SSP0008

9.59

0.00

28

25

5.1

4.9

9 (8)

537

44

Light-harvesting complex II LHCB1

SSP0006

4.45

0.01

29

24

5.1

4.8

5 (2)

107

12

Light-harvesting complex II LHCB3*

SSP1002

3.91

0.00

29

23

5.2

4.9

5 (2)

122

14

Light-harvesting complex II LHCB3

SSP1304

16.3

0.00

42

43

6.0

4.9

21 (14)

644

43

Sedoheptulose-1,7-bisphosphatase, Chloroplast

SSP8619

21.4

0.00

50

71

6.7

6.2

16 (4)

310

34

RUBISCO large subunit

SSP1306

3.24

0.01

48

46

5.5

4.9

27 (11)

588

50

RUBISCO activase, chloroplast

SSP1416

4.01

0.00

52

50

5.7

5.0

24 (11)

485

41

RUBISCO activase, chloroplast

SSP1411

6.01

0.00

52

50

5.5

4.9

27 (7)

546

47

RUBISCO activase, chloroplast

SSP1308

7.35

0.00

52

45

5.5

4.9

26 (3)

304

44

RUBISCO activase, chloroplast

SSP3304

9.41

0.00

52

45

5.5

5.3

22 (7)

281

43

RUBISCO activase, chloroplast

SSP1404

5.21

0.00

52

51

5.5

4.8

23 (8)

342

44

RUBISCO activase, chloroplast

SSP4407

4.74

0.01

91

51

8.6

5.4

11 (5)

177

11

Triacylglycerol lipase

SSP4206

5.18

0.00

34

35

5.4

5.4

13 (6)

440

49

Isoflavone reductase protein 4

SSP3002

5.67

0.00

25

24

5.5

5.2

4 (2)

46

26

Proteasome 20 S beta subunit A

SSP5606

12.3

0.00

75

70

5.5

5.6

9 (3)

216

19

Subtilisin protease C1

SSP5217

3.57

0.00

33

31

6.4

5.6

18 (6)

333

53

Thioredoxin-like protein CDSP32

SSP0205

4.65

0.00

35

35

5.1

4.6

9 (7)

290

26

PAP/fibrillin family

SSP1102

11.6

0.00

32

29

7.8

4.8

9 (7)

421

43

PAP/fibrillin family

SSP7009

4.98

0.02

17

16

6.0

6.0

10 (5)

272

49

pathogenesis protein 1

SSP3604

4.64

0.00

74

71

5.8

5.2

11 (6)

172

16

FtsH protease (VAR2)*

SSP2616

10.4

0.00

74

68

5.8

5.2

31 (11)

699

48

FtsH protease (VAR2)

SSP2609

4.1

0.00

74

70

5.8

5.1

17 (9)

405

21

FtsH protease (VAR2)

SSP0703

6.22

0.00

90

85

4.9

4.8

17 (5)

279

29

Embryo defective 1956

SSP8214

5.24

0.00

43

40

7.1

6.1

25 (8)

463

57

mRNA-binding protein precursor

SSP5011

5.73

0.00

28

19

5.6

5.6

6 (6)

216

23

Thylakoid lumenal 19 kDa, chloroplast

SSP0202

43

0.00

 

35

 

4.5

    

SSP0402

2.88

0.00

 

47

 

4.6

    

SSP3507

2.94

0.02

 

59

 

5.2

    

SSP4511

3.09

0.00

 

62

 

5.5

    

SSP3714

3.61

0.00

 

94

 

5.2

    
  1. SSP, standard spot number; SD/LD, normalized spot volume in the SD divided by the normalized spot volume in the LD, from 6 different plants; Pval, p-value Th M r, theoretical molecular mass; Exp M r, experimental molecular mass; Th p I, theoretical pI; Exp p I, experimental pI; Pep, number of peptides mass and in ( ) the number of MS/MS ions matching the query; M score, MOWSE score; % Cov, percentage of coverage; Function, description of protein identity (*Spots with multiple positive identifications)
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