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Table 4 Proteins whose abundance was significantly more abundant in SD than LD at 28 days.

From: Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapevines

SSP SD/LD Pval Th Mr Exp Mr Th Pi Exp Pi Pep M score % Cov Function
SSP6408 4.15 0.00 37 46 6.6 5.7 9 (6) 268 35 Fumarylacetoacetase*
SSP5407 17.8 0.00 48 46 7.1 5.7 7 (5) 193 15 Glutamine synthetase
SSP8713 2.69 0.01 115 92 6.9 6.2 35 (13) 723 36 Glycine dehydrogenase
SSP7412 3.21 0.00 48 49 5.9 6.0 25 (11) 523 48 Methylthioribose kinase
SSP6412 3.93 0.01 48 48 7.6 5.8 13 (6) 205 29 Glyceraldehyde-3-P dehydrogenase B, chloroplast*
SSP7317 3.4 0.00 43 41 8.1 6.0 18 (11) 781 45 Fructose-bisphosphate aldolase, chloroplast*
SSP5218 3.49 0.00 32 36 5.5 5.6 21 (9) 446 57 Phosphogluconate dehydrogenase
SSP7710 3.29 0.02 67 76 5.9 5.9 33 (10) 579 55 Transketolase, chloroplast
SSP5106 2.99 0.00 29 26 8.8 5.6 12 (4) 159 31 Dehydroascorbate reductase
SSP7406 4.28 0.00 47 47 6.3 5.9 24 (12) 829 59 Monodehydroascorbate reductase*
SSP4401 9.27 0.00 56 53 6.5 5.4 31 (10) 674 53 Glucose-1-P adenylyltransferase small sub, chloroplast
SSP5219 5.62 0.00 33 37 5.5 5.6 16 (7) 331 42 Lactoylglutathione lyase
SSP2202 2.96 0.00 40 33 6.2 5.0 10 (6) 203 24 phosphoglycolate phosphatase
SSP3111 6.23 0.00 35 30 8.7 5.2 6 (5) 136 21 phosphoglycolate phosphatase
SSP3501 8.93 0.00 55 62 5.3 5.2 22 (15) 752 39 ATP synthase CF1 alpha subunit
SSP2515 4.63 0.00 55 63 5.3 5.1 31 (16) 905 43 ATP synthase CF1 alpha subunit
SSP5314 5.84 0.00 33 41 5.7 5.6 20 (13) 677 79 Quinone oxidoreductase, chloroplast
SSP7321 8.32 0.00 33 40 5.7 5.9 10 (3) 173 49 Quinone oxidoreductase, chloroplast
SSP5009 3 0.01 21 16 6.9 5.6 3 (3) 220 19 Cyt B6-F complex iron-sulfur sub, PETC
SSP2206 2.82 0.01 35 31 6.1 5.1 11 (7) 268 27 Photosystem II PsbO protein
SSP1121 5 0.00 35 30 7.6 5.0 7 (3) 86 23 Photosystem II PsbO protein
SSP1116 3.02 0.02 35 31 7.6 5.0 8 (4) 100 28 Photosystem II PsbO protein
SSP3010 5.36 0.00 28 23 8.3 5.4 8 (6) 400 31 Photosystem II PsbP protein
SSP1006 12.1 0.00 26 22 5.8 5.0 5 (3) 125 18 Light-harvesting complex I LHCA1
SSP0008 9.59 0.00 28 25 5.1 4.9 9 (8) 537 44 Light-harvesting complex II LHCB1
SSP0006 4.45 0.01 29 24 5.1 4.8 5 (2) 107 12 Light-harvesting complex II LHCB3*
SSP1002 3.91 0.00 29 23 5.2 4.9 5 (2) 122 14 Light-harvesting complex II LHCB3
SSP1304 16.3 0.00 42 43 6.0 4.9 21 (14) 644 43 Sedoheptulose-1,7-bisphosphatase, Chloroplast
SSP8619 21.4 0.00 50 71 6.7 6.2 16 (4) 310 34 RUBISCO large subunit
SSP1306 3.24 0.01 48 46 5.5 4.9 27 (11) 588 50 RUBISCO activase, chloroplast
SSP1416 4.01 0.00 52 50 5.7 5.0 24 (11) 485 41 RUBISCO activase, chloroplast
SSP1411 6.01 0.00 52 50 5.5 4.9 27 (7) 546 47 RUBISCO activase, chloroplast
SSP1308 7.35 0.00 52 45 5.5 4.9 26 (3) 304 44 RUBISCO activase, chloroplast
SSP3304 9.41 0.00 52 45 5.5 5.3 22 (7) 281 43 RUBISCO activase, chloroplast
SSP1404 5.21 0.00 52 51 5.5 4.8 23 (8) 342 44 RUBISCO activase, chloroplast
SSP4407 4.74 0.01 91 51 8.6 5.4 11 (5) 177 11 Triacylglycerol lipase
SSP4206 5.18 0.00 34 35 5.4 5.4 13 (6) 440 49 Isoflavone reductase protein 4
SSP3002 5.67 0.00 25 24 5.5 5.2 4 (2) 46 26 Proteasome 20 S beta subunit A
SSP5606 12.3 0.00 75 70 5.5 5.6 9 (3) 216 19 Subtilisin protease C1
SSP5217 3.57 0.00 33 31 6.4 5.6 18 (6) 333 53 Thioredoxin-like protein CDSP32
SSP0205 4.65 0.00 35 35 5.1 4.6 9 (7) 290 26 PAP/fibrillin family
SSP1102 11.6 0.00 32 29 7.8 4.8 9 (7) 421 43 PAP/fibrillin family
SSP7009 4.98 0.02 17 16 6.0 6.0 10 (5) 272 49 pathogenesis protein 1
SSP3604 4.64 0.00 74 71 5.8 5.2 11 (6) 172 16 FtsH protease (VAR2)*
SSP2616 10.4 0.00 74 68 5.8 5.2 31 (11) 699 48 FtsH protease (VAR2)
SSP2609 4.1 0.00 74 70 5.8 5.1 17 (9) 405 21 FtsH protease (VAR2)
SSP0703 6.22 0.00 90 85 4.9 4.8 17 (5) 279 29 Embryo defective 1956
SSP8214 5.24 0.00 43 40 7.1 6.1 25 (8) 463 57 mRNA-binding protein precursor
SSP5011 5.73 0.00 28 19 5.6 5.6 6 (6) 216 23 Thylakoid lumenal 19 kDa, chloroplast
SSP0202 43 0.00   35   4.5     
SSP0402 2.88 0.00   47   4.6     
SSP3507 2.94 0.02   59   5.2     
SSP4511 3.09 0.00   62   5.5     
SSP3714 3.61 0.00   94   5.2     
  1. SSP, standard spot number; SD/LD, normalized spot volume in the SD divided by the normalized spot volume in the LD, from 6 different plants; Pval, p-value Th M r, theoretical molecular mass; Exp M r, experimental molecular mass; Th p I, theoretical pI; Exp p I, experimental pI; Pep, number of peptides mass and in ( ) the number of MS/MS ions matching the query; M score, MOWSE score; % Cov, percentage of coverage; Function, description of protein identity (*Spots with multiple positive identifications)