Skip to main content

Table 2 Functional classification of proteins identified by dMS and SC workflows (see Experimental Procedures) after search of the iCitrus database.

From: A label-free differential quantitative mass spectrometry method for the characterization and identification of protein changes during citrus fruit development

 

Stage II vs. early Stage II

Stage III vs. Stage II

 

Up

No Change

Down

Total

Up

No Change

Down

Total

Functional category

dMS

SC

dMS

SC

dMS

SC

dMS

SC

dMS

SC

dMS

SC

dMS

SC

dMS

SC

Cell Cycle

0

0

1

1

3

1

4

2

0

0

0

2

0

0

0

2

Cell Wall

18

2

8

3

8

4

34

9

37

4

3

3

3

10

43

17

Energy

26

4

23

11

35

24

84

39

24

10

12

20

4

2

40

32

Heat Shock/Chaperone

66

25

40

15

29

8

135

48

80

21

55

24

0

10

135

55

Metabolism

86

34

87

44

115

38

288

116

238

53

91

111

5

27

334

191

Oxidative processes

32

11

39

11

34

11

15

33

90

20

18

24

6

5

114

49

Processing

9

15

34

16

63

14

106

45

62

26

40

35

7

16

109

77

Signaling

30

16

23

16

36

16

89

48

39

7

14

22

11

11

64

40

Structure

48

2

13

5

20

10

81

17

25

1

10

2

30

8

65

11

Trafficking

14

6

32

16

41

14

87

36

40

11

39

24

0

1

79

36

Transcription

4

2

26

12

24

12

54

26

33

4

2

13

3

6

38

23

Translation

65

10

35

28

113

32

213

70

43

5

87

39

10

28

140

72

Transport

29

6

15

16

43

24

87

46

70

12

29

24

0

1

99

37

Unknown

24

23

50

28

53

30

127

81

69

28

28

49

7

24

104

101

Sum.

451

156

426

222

617

238

1494

616

850

202

428

392

86

149

1364

743

  1. Proteins were classified into 14 major groups and are represented according to fruit development stages comparisons according to the method used (dMS and SC).