Table 5 Transport-related proteins identified by dMS and SC.
| Â | Â | Â | Stage II (55 mm) vs. early stage II (35 mm) | Stage III (80 mm) vs. Stage II (55 mm) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | dMS | SC | dMS | SC | ||||||
Annotation | iCitrus ID | Blast Hit TAIR ID | Peptides | Ratio | Bayes Factor | Fold Change | Direction* | Peptides | Ratio | Bayes Factor | Fold Change | Direction* |
Ca2+ -ATPase | 45644 | AT1G07670 | -- | -- | 1.2 | 2.9 | 0 | 2 | 20.88 | 27.99 | 4.99 | 1 |
Ca2+/Na+ exchanger | 47787 | AT1G53210 | 2 | 0.27 | 14.27 | 3.00 | -1 | 2 | 9.04 | 0.71 | 1.15 | 0 |
KEA2 (K+/H+ antiporter) | 36862 | AT4G00630 | 2 | 0.40 | 1.41 | 1.75 | 0 | -- | -- | 0.8 | 1.2 | 0 |
porin, putative; voltage-dependent anion channel | 23759 | AT3G01280 | 2 | 0.19 | 13.9 | 6.34 | -1 | 2 | 6.09 | 15.91 | 4.81 | 1 |
DET3 C subunit C (V-type H+- ATPase) | 58235 | AT1G12840 | 3 | 0.27 | 45.53 | 3.26 | -1 | -- | -- | 1.2 | 1.48 | 0 |
AVP1 (vacuolar H+-PPiase) | 36100 | AT1G15690 | 4 | 2.31 | 1.1 | 1.2 | 0 | Â | Â | 2.76 | 1.63 | 0 |
VHA-A | 27256 | AT1G78900 | 13 | 0.04 | 1011648 | 3.99 | -1 | 12 | 9.94 | 38.82 | 2.2 | 1 |
VHA-A3 (V-ATPase) | 49974 | AT4G39080 | 4 | 0.44 | -- | -- | -- | 3 | 4.01 | -- | -- | -- |
V-type ATPase subunit B1 | 3683 | AT1G76030 | 8 | 0.05 | -- | -- | -- | 5 | 13.78 | -- | -- | -- |
V-type ATPase subunit B2 | 62399 | AT4G38510 | 11 | 0.06 | -- | -- | -- | 9 | 11.25 | -- | -- | -- |
V-type ATPase subunit B3 | 37671 | AT1G20260 | 11 | 0.06 | 140.60 | 2.13 | -1 | 9 | 11.25 | 1004 | 2.64 | 1 |
V-type ATPase subunit D | 23422 | AT3G58730 | -- | -- | 34.4 | 5.4 | -1 | -- | -- | 1.55 | 1.45 | 0 |
V-type ATPase subunit E1 | 52391 | AT4G11150 | -- | -- | 19.83 | 3.22 | -1 | 2 | 5.12 | 7.23 | 1.94 | 0 |
VMA10 (V-type ATPase 10); Subunit G | 28722 | AT3G01390 | 3 | 0.28 | 36.6 | 2.8 | -1 | -- | -- | 0.15 | 1.78 | 0 |
V-type ATPase subunit H | 38700 | AT3G42050 | 6 | 0.25 | 36.6 | 2.82 | -1 | 4 | 13.57 | 0.58 | 1.06 | 0 |
AHA2 (H+-ATPase 2) | 50370 | AT4G30190 | 3 | 0.53 | 0.98 | 1.23 | 0 | 4 | 11.79 | 1.75 | 1.49 | 0 |
AHA4 (H+- ATPase 4) | 28397 | AT3G47950 | 3 | 1.14 | 11055 | 20.4 | -1 | 3 | 7.40 | 0.9 | 1.5 | 0 |
AHA8 (H+- ATPase 8) | 56228 | AT3G42640 | 2 | 0.35 | -- | -- | -- | 2 | 13.60 | -- | -- | -- |
AHA10 (Autoinhibited H+- ATPase isoform 10) | 56764 | AT1G17260 | 4 | 1.13 | 5.8 | 1.55 | 0 | 4 | 41.48 | 1.36 | 1.19 | 0 |
H+- ATPase | 42025 | AT3G28710 | 2 | 0.11 | 335 | 18.72 | -1 | 2 | 17.27 | 22.04 | 4.37 | 1 |
TMT1 (tonoplast monosaccharide transporter1) | 44853 | AT1G20840 | 3 | 24.79 | 3.0 | 1.1 | 0 | -- | -- | 382 | 5.1 | 1 |
TMT2, (tonoplast monosaccharide transporter 2 | 41259 | AT4G35300 | 8 | 32.69 | 16121 | 2.64 | 1 | 6 | 15.26 | 9.5 | 1.9 | 0 |
GPT2 (glucose-6-phosphate/phosphate translocator 2) | 44184 | AT1G61800 | 2 | 0.10 | 28.2 | 12.3 | -1 | -- | -- | 0.8 | 1.2 | 0 |
mannitol transporter | 32978 | AT2G16130 | -- | -- | 439 | 18.8 | -1 | -- | -- | 5.8 | 3.2 | 0 |
LPT(lipid transfer protein) | 45077 | AT1G27950 | 2 | 0.01 | 5258.00 | 22.44 | -1 | -- | -- | -- | -- | -- |
LTP3 | 58907 | AT5G59320 | -- | -- | 2.86 | 4 | 0 | -- | -- | 7447 | 21.8 | -1 |
PDR6/PDR6 (pleiotropic drug resistance 6); ATPase | 26072 | AT2G36380 | -- | -- | 4.5 | 7.11 | 0 | -- | -- | 49.8 | 3.9 | 1 |
PDR11/PDR11 (pleiotropic drug resistance 11); ATPase | 52044 | AT1G66950 | -- | -- | -- | -- | -- | 2 | 11.74 | 1.18 | 1.56 | 0 |
PDR12/(PLEIOTROPIC DRUG 12); ATPase | 19314 | AT1G15520 | -- | -- | 0.98 | 1.03 | 0 | 2 | 14.97 | 5.44 | 3.46 | 0 |
MAPR2 (membrane-associated progesterone binding protein 2) | 28962 | AT2G24940 | 3 | 1.62 | 1.57 | 1.65 | 0 | 3 | 45.68 | 1.38 | 1.69 | 0 |
MRP4 (multidrug resistance-associated protein 4) | 46730 | AT2G47800 | 2 | 1.36 | 2.62 | 2.64 | 0 | 5 | 58.12 | 19.3 | 2.6 | 1 |
PGP7 (P-GLYCOPROTEIN 7); ATPase | 10552 | AT5G46540 | -- | -- | 2.06 | 5.56 | 0 | -- | -- | 10.4 | 3.6 | 1 |
PIP1B (plasma membrane intrinsic protein 1;2); water transport | 18285 | AT2G45960 | -- | -- | 149.18 | 27.06 | -1 | -- | -- | -- | -- | -- |
PIP2;8/PIP3B (plasma membrane intrinsic protein 2;8); water channel | 25444 | AT2G16850 | -- | -- | 462 | 23 | -1 | -- | -- | 0.9 | 1 | 0 |
PIP2;5/PIP2 D (plasma membrane intrinsic protein 2;5); water channel | 41682 | AT3G54820 | -- | -- | 635.26 | 39.02 | -1 | -- | -- | -- | -- | -- |
TMP-C (plasma membrane intrinsic protein 1;4); water channel | 28678 | AT4G00430 | 3 | 0.11 | 35.06 | 10.97 | -1 | -- | -- | 2.76 | 2.70 | 0 |
protein transporter | 51128 | AT2G20760 | 3 | 30 | 0.2 | 1.6 | 0 | 2 | 1.80 | 0.84 | 1.22 | 0 |
protein transporter | 21278 | AT3G51890 | 2 | 118.94 | 1510 | 6.2 | 1 | -- | -- | 1.63 | 1.57 | 0 |
TOM20-3 (translocase of outer membrane) | 33905 | AT3G27080 | 4 | 0.45 | 0.6 | 1.16 | 0 | 3 | 4.75 | 18.02 | 2.97 | 1 |
ACP4 (acyl carrier 4) | 25090 | AT4G25050 | 3 | 0.34 | 3.1 | 2.27 | 0 | -- | -- | 13.4 | 7.8 | 1 |
AAC2 (ADP/ATP carrier) | 53189 | AT5G13490 | 8 | 0.27 | 16767 | 10.36 | -1 | 5 | 21.36 | 1.01 | 1.02 | 0 |
AAC3 (ADP/ATP carrier) | 26451 | AT4G28390 | 10 | 0.22 | 1040 | 3.48 | -1 | 6 | 76.16 | 32.95 | 2.75 | 1 |
mitochondrial phosphate transporter | 44051 | AT5G14040 | 4 | 0.10 | 10.8 | 3 | -1 | 2 | 4.29 | 0.79 | 1.2 | 0 |
PDE120 protein import (Tic40) | 57128 | AT5G16620 | 2 | 0.34 | -- | -- | -- | -- | -- | -- | -- | -- |
di/tricarboxylate carrier | 39221 | AT5G19760 | 5 | 56.47 | 0.52 | 1.49 | 0 | 2 | 25.92 | 0.69 | 1.13 | 0 |
TOM22-V (translocase outer mitochondrial membrane) | 38717 | AT5G43970 | -- | -- | 160 | 17.8 | -1 | -- | -- | 2.98 | 2.65 | 0 |
Lipocalin | 23197 | AT5G58070 | 2 | 29.74 | 44.2 | 4.3 | 1 | 3 | 10.49 | 40.34 | 2.3 | 1 |