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Table 1 Errors of the predicted locations and orientation on the 11 test cases (PDB11).

From: Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric properties

PDB ID and the chain ID

Location error in Ă…

Groove type to which the top-1 DBU binds

Orientation error in degree

1KU7:A

0.8

Major

7.7

1RIO:A

3.6

Major

21.3

2R1J:L

8.7

NA

NA

2Z3X:A

4.0

Minor

5.0

1A3Q:A

5.7

Major

19.6

3DFX:A

2.4

Major

10.7

2O49:A

8.8

NA

NA

2E1C:A

23.2

NA

NA

3ERE:D

2.7

Major

41.9

1BDT:A

13.6

NA

NA

3CLC:A

5.1

Major

63.7

  1. The four cases for which the proposed method failed to find a correct binding location are shown in italic form.