Figure 2
From: A binary matrix factorization algorithm for protein complex prediction
Prediction accuracies of BMF, MCL and SC on real world PPI networks Prediction accuracies of BMF, MCL and SC on real world PPI networks are collected from MIPS (left) and DIP database (right). On a large real PPI network, since it is expensive to implement BMF under repeatedly random initializations and it is not only expensive but also not practical to tune the inflation parameter for MCL using a probably subset of the underlying true complexes as the reference complexes, we implement BMF(avg) and MCL(1.8).