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Table 3 Comparison of the alignment quality

From: SProt: sphere-based protein structure similarity algorithm

Method RMSD Cover TM-score
SProt + TM-optimization 3.29 85.8 0.65
SProt 7.29 73.8 0.43
Vorometric 3.02 84.8 0.65
Vorolign 2.28 51.7 0.56
DaliLite 2.82 80.0 0.61
SSAP 4.37 88.1 0.59
CE 3.17 83.4 0.60
  1. The tests were performed on the special set of 10 difficult pairs of structures and average values of various characteristics are presented. The values of the compared methods are taken from [10].