ATPsite: sequence-based prediction of ATP-binding residues

Table 3 Predictive quality achieved with individual input types; the inputs are sorted in the descending order using the AUC values.

Input type	# features	AUC	SENS	SPEC	ACC	MCC
PSSM profile	180	0.824	0.354	0.957	0.933	0.270
AA groups	36	0.785	0.390	0.924	0.902	0.218
Conservation B	17	0.745	0.470	0.860	0.844	0.181
Conservation A	17	0.744	0.427	0.892	0.873	0.194
Conservation C	17	0.741	0.564	0.792	0.783	0.170
Pred. secondary structure	51	0.732	0.651	0.720	0.717	0.161
Sec. str. segment indicator	6	0.706	0.656	0.683	0.682	0.143
Pred. dihedral angles	34	0.696	0.656	0.637	0.638	0.120
Collocation of AA pairs	153	0.671	0.182	0.990	0.957	0.261
Pred. solvent accessibility	17	0.628	0.194	0.918	0.889	0.079
Terminal indicator	1	0.517	0.989	0.045	0.084	0.033

ISSN: 1477-5956