Table 2 Performance comparison of Identify protein complexes methods on Gavin dataset

GO_Function

GO_Process

GO_Component

CoreMethod

0.526596

0.279412

0.365101

0.491702

0.579787

0.430851

0.478723

Mcode

0.733333

0.294118

0.419847

0.469031

0.511111

0.392593

0.474074

MCL

0.540373

0.27451

0.364071

0.509139

0.503106

0.391304

0.459627

RNSC

0.400651

0.348039

0.372497

0.489759

0.332248

0.247557

0.309446

CMC

0.608

0.218

0.3211

0.474

0.692

0.55

0.633

CFinder

0.663

0.191

0.297

0.419

0.602

0.439

0.551

COACH

0.524

0.331

0.406

0.49

0.656

0.525

0.61

IPCA

0.526032

0.338235

0.411731

0.48789

0.719928

0.587074

0.666068

OIIP T=0.4

0.559816

0.384804

0.456097

0.521424

0.697853

0.553681

0.636503

OIIP T=0.5

0.606195

0.335784

0.432177

0.490394

0.769912

0.639381

0.710177