Table 4 Average computation time to create a profile by PSI-BLAST using sequences of different length as input. In Scheme I, full-length sequences are presented to PSI-BLAST and the resulting profiles are truncated at the predicted cleavage sites. In Scheme II, truncation is applied to the sequences before presenting to PSI-BLAST. In both cases, CRFs (CSitePred) were used to predict the cleavage sites.
From: Fast subcellular localization by cascaded fusion of signal-based and homology-based methods
Scheme | Input to PSI-BLAST | Profile Creation Time (second) | Subcellular Localization Accuracy |
|---|---|---|---|
I | Full-length sequences | 30.5 | 91.69% |
II | Sequences truncated at predicted cleavage sites | 4.7 | 91.45% |