TY - JOUR AU - Parker, K. C. AU - Garrels, J. I. AU - Hines, W. AU - Butler, E. M. AU - McKee, A. H. AU - Patterson, D. AU - Martin, S. PY - 1998 DA - 1998// TI - Identification of yeast proteins from two-dimensional gels: working out spot cross-contamination JO - Electrophoresis VL - 19 UR - https://doi.org/10.1002/elps.1150191110 DO - 10.1002/elps.1150191110 ID - Parker1998 ER - TY - JOUR AU - Karty, J. A. AU - Ireland, M. M. E. AU - Brun, Y. V. AU - Reilly, J. P. PY - 2002 DA - 2002// TI - Artifacts and unassigned masses encountered in peptide mass mapping JO - J Chromatogr B VL - 782 UR - https://doi.org/10.1016/S1570-0232(02)00550-0 DO - 10.1016/S1570-0232(02)00550-0 ID - Karty2002 ER - TY - JOUR AU - Ding, Q. AU - Xiao, L. AU - Xiong, S. AU - Jia, Y. AU - Que, H. AU - Guo, Y. AU - Liu, S. PY - 2003 DA - 2003// TI - Unmatched masses in peptide mass fingerprints caused by cross-contamination: an updated statistical result JO - Proteomics VL - 3 UR - https://doi.org/10.1002/pmic.200300452 DO - 10.1002/pmic.200300452 ID - Ding2003 ER - TY - BOOK AU - Keil, B. PY - 1992 DA - 1992// TI - Specificity of Proteolysis PB - Springer-Verlag CY - Berlin UR - https://doi.org/10.1007/978-3-642-48380-6 DO - 10.1007/978-3-642-48380-6 ID - Keil1992 ER - TY - JOUR AU - Fannes, T. AU - Vandermarliere, E. AU - Schietgat, L. AU - Degroeve, S. AU - Martens, L. AU - Ramon, J. PY - 2013 DA - 2013// TI - Predicting tryptic cleavage from proteomics data using decision tree ensembles JO - J Proteome Res VL - 12 UR - https://doi.org/10.1021/pr4001114 DO - 10.1021/pr4001114 ID - Fannes2013 ER - TY - JOUR AU - Barsnes, H. AU - Mikalsen, S. -. O. AU - Eidhammer, I. PY - 2006 DA - 2006// TI - MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-42 DO - 10.1186/1471-2105-7-42 ID - Barsnes2006 ER - TY - JOUR AU - Barsnes, H. AU - Eidhammer, I. AU - Cruciani, V. AU - Mikalsen, S. -. O. PY - 2008 DA - 2008// TI - Protease-dependent fractional mass and peptide properties JO - Eur J Mass Spectrom (Chichester, Eng) VL - 14 UR - https://doi.org/10.1255/ejms.934 DO - 10.1255/ejms.934 ID - Barsnes2008 ER - TY - JOUR AU - Perkins, D. N. AU - Pappin, D. J. C. AU - Creasy, D. M. AU - Cottrell, J. S. PY - 1999 DA - 1999// TI - Probability-based protein identification by searching sequence databases using mass spectrometry data JO - Electrophoresis VL - 20 UR - https://doi.org/3.0.CO;2-2 DO - 3.0.CO;2-2 ID - Perkins1999 ER - TY - JOUR AU - Gattiker, A. AU - Bienvenut, W. V. AU - Bairoch, A. AU - Gasteiger, E. PY - 2002 DA - 2002// TI - FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification JO - Proteomics VL - 2 UR - https://doi.org/3.0.CO;2-9 DO - 3.0.CO;2-9 ID - Gattiker2002 ER - TY - JOUR AU - Schmidt, F. AU - Schmid, M. AU - Jungblut, P. R. AU - Mattow, J. AU - Facius, A. AU - Pleissner, K. P. PY - 2003 DA - 2003// TI - Iterative data analysis is the key for exhaustive analysis of peptide mass fingerprints from proteins separated by two-dimensional electrophoresis JO - J Am Soc Mass Spectrom VL - 14 UR - https://doi.org/10.1016/S1044-0305(03)00345-3 DO - 10.1016/S1044-0305(03)00345-3 ID - Schmidt2003 ER - TY - JOUR AU - Tiengo, A. AU - Barbarini, N. AU - Troiani, S. AU - Rusconi, L. AU - Magni, P. PY - 2009 DA - 2009// TI - A Perl procedure for protein identification by Peptide Mass Fingerprinting JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-S12-S11 DO - 10.1186/1471-2105-10-S12-S11 ID - Tiengo2009 ER - TY - JOUR AU - Harris, W. A. AU - Janecki, D. J. AU - Reilly, J. P. PY - 2002 DA - 2002// TI - Use of matrix clusters and trypsin autolysis fragments as mass calibrants in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry JO - Rapid Commun Mass Spectrom VL - 16 UR - https://doi.org/10.1002/rcm.775 DO - 10.1002/rcm.775 ID - Harris2002 ER - TY - JOUR AU - Fonville, J. M. AU - Carter, C. AU - Cloarec, O. AU - Nicholson, J. K. AU - Lindon, J. C. AU - Bunch, J. AU - Holmes, E. PY - 2012 DA - 2012// TI - Robust data processing and normalization strategy for MALDI mass spectrometric imaging JO - Anal Chem VL - 84 UR - https://doi.org/10.1021/ac201767g DO - 10.1021/ac201767g ID - Fonville2012 ER - TY - JOUR AU - Tabb, D. L. AU - Friedman, D. B. AU - Ham, A. -. J. L. PY - 2006 DA - 2006// TI - Verification of automated peptide identifications from proteomic tandem mass spectra JO - Nat Protoc VL - 1 UR - https://doi.org/10.1038/nprot.2006.330 DO - 10.1038/nprot.2006.330 ID - Tabb2006 ER - TY - JOUR AU - Han, X. AU - He, L. AU - Xin, L. AU - Shan, B. AU - Ma, B. PY - 2011 DA - 2011// TI - PeaksPTM: mass spectrometry-based identification of peptides with unspecified modifications JO - J Proteome Res VL - 10 UR - https://doi.org/10.1021/pr200153k DO - 10.1021/pr200153k ID - Han2011 ER - TY - JOUR AU - Martens, L. PY - 2010 DA - 2010// TI - A report on the ESF workshop on quality control in proteomics JO - Mol BioSyst VL - 6 UR - https://doi.org/10.1039/c003912h DO - 10.1039/c003912h ID - Martens2010 ER - TY - JOUR AU - Gu, Q. AU - Yu, L. -. R. PY - 2014 DA - 2014// TI - Proteomics quality and standard: from a regulatory perspective JO - J Proteome VL - 96 UR - https://doi.org/10.1016/j.jprot.2013.11.024 DO - 10.1016/j.jprot.2013.11.024 ID - Gu2014 ER - TY - JOUR AU - Naulaerts, S. AU - Meysman, P. AU - Bittremieux, W. AU - Vu, T. N. AU - Vanden Berghe, W. AU - Goethals, B. AU - Laukens, K. PY - 2013 DA - 2013// TI - A primer to frequent itemset mining for bioinformatics JO - Brief Bioinform ID - Naulaerts2013 ER - TY - CHAP AU - Mampaey, M. AU - Tatti, N. AU - Vreeken, J. PY - 2011 DA - 2011// TI - Tell me what i need to know: succinctly summarizing data with itemsets BT - Proceedings of the 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining PB - ACM CY - New York, NY, USA ID - Mampaey2011 ER - TY - JOUR AU - Maes, E. AU - Landuyt, B. AU - Mertens, I. AU - Schoofs, L. PY - 2013 DA - 2013// TI - Interindividual variation in the proteome of human peripheral blood mononuclear cells JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0061933 DO - 10.1371/journal.pone.0061933 ID - Maes2013 ER - TY - JOUR AU - Bairoch, A. AU - Boeckmann, B. PY - 1994 DA - 1994// TI - The SWISS-PROT protein sequence data bank: current status JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.17.3626 DO - 10.1093/nar/22.17.3626 ID - Bairoch1994 ER -