Secretome analysis of rice suspension-cultured cells infected by Xanthomonas oryzae pv.oryza (Xoo)

Table 1 The list of Xoo-responsive secreted rice proteins in rice suspension-culture medium identified by MS/MS. The average fold change of Xoo-inoculated to mock (positive numbers) or mock to Xoo-inoculated (negative numbers) was calculated from three biological replicates

No^a	Accession No.	Locus	Match peptide^b	SC %^c	Average fold change^d	Molecular function and or property	Cell location	SignalP^e
N18	gi\|115464537	Os05g0482700	12	31	9.85 ± 0.047	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	extracellular	-
N19	gi\|125560875	OsI_28556	5	34	8.19 ± 0.016	plastocyanin-like domain containing protein, putative, expressed	extracellular	Yes
N21	gi\|125560875	OsI_28556	5	21	7.36 ± 0.024	plastocyanin-like domain containing protein, putative, expressed	extracellular	Yes
N24	gi\|222618730	OsJ_02342	13	15	5.2 ± 0.024	beta-galactosidase	extracellular	Yes
N26	gi\|115447367	Os02g0621700	25	66	4.53 ± 0.045	succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed	mitochondrial	-
N28	gi\|115473931	Os07g0665200	8	64	1.63 ± 0.043	copper/zinc superoxide dismutase, putative, expressed	cytoplasmic	-
N27	gi\|115481730	Os10g0370500	16	38	2.65 ± 0.024	cellulase, putative, expressed	plasma membrane	Yes
N32	gi\|115450541	Os03g0132900	13	53	−5.83 ± 0.024	CHIT16 - family protein precursor, expressed	extracellular	Yes

^aspot number as given in Fig. 1. Some proteins from different spots correspond to the same gene suggesting they may have been post-translationally modified
^bnumber of matched peptides
^csequence coverage
^dFold change with p <0.05
SignalP^e “Yes” means protein was predicted to have a signal peptide