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Table 1 Major reviews in the field of PAL

From: Photo-affinity labeling (PAL) in chemical proteomics: a handy tool to investigate protein-protein interactions (PPIs)

Sr. No.

Title

Journal

Authors and brief description

1

Benzophenone Photophores in Biochemistry

Biochemistry, 1994, 33(19), 5661–5673.

Glenn D. Prestwich et al. Here they have shown the detail study of the benzophenone photochemistry. The main points discussed are, overview of the BP photochemistry, and biochemical applications of tethered BPs, Site-directed photolabelling with polypeptides containing amino acids 4-benzoylphenylalanine and related amino acids and photo-crosslinking with heterobifunctional cross-linking agents.

2

Recent Trends in Photoaffinity Labeling

Angew. Chem. Int. Ed. Engl. 1995, 34. 1296–1312.

Maurice Goeldner et al. have talked about the ligand-receptor interactions.

3

Benzophenone Photoprobes for Phosphoinositides, Peptides and Drugs

Photochemistry and Photobiology, 1997, 65(2), 222–234.

Glenn D. Prestwich et al. have discussed BP photoprobes for Phosphoinositides, Peptides and Drugs. The main headlines include: BP and BP-like photosystems, Photochemical and design considerations, Drugs, substrates and inhibitors, Peptides, nucleotides and nucleosides, Phosphoinositides.

4

Recent Progress in Diazirine-Based Photoaffinity Labeling

Eur. J. Org. Chem. 2008, 2513–2523.

Makoto Hashimoto et al. In this review authors mostly give emphasis on the PAL of diazirines mostly up to 2008.

5

Photocrosslinkers illuminate interactions in living cells

Mol. BioSyst. 2008, 4, 473–480.

Jennifer J. Kohler et al. here authors summarized the technology of cellular incorporation of photo-crosslinking amino acids and sugars becomes routine, to analyze crosslinked complexes

6

Target Identification by Diazirine Photo-Cross-Linking and Click Chemistry

Curr. Protoc. Chem. Biol., 2009, 1, 55.

Jack Taunton et al. In this book chapter authors have given insight into the development of diazirine bases PAL.

7

Proteome-wide detection of phospholipid-protein interactions in mitochondria by photocrosslinking and click chemistry

Mol. BioSyst., 2010, 6, 1751–1759.

Anton I. P. M. de Kroon et al. Here they summarize phospholipid-protein interactions in mitochondria by photocrosslinking and click chemistry.

8

Probing small molecule-protein interactions: A new perspective for functional proteomics

Journal of Proteomics, 2011, 75, 100–115.

Mathias Dreger et al. have summarized, probe designs, workflows, and published applications of the three dominant approaches in the field, namely affinity pull-down, activity-based protein profiling, and Capture Compound Mass Spectrometry.

9

Aliphatic Diazirines as Photoaffinity Probes for Proteins: Recent Developments

Chem. Rev. 2011, 111, 4405–4417.

Joydip Das gave the detail summary in the development of aliphatic diazirines.

10

Diazirine based photoaffinity labeling

Bioorg. Med. Chem. 2012, 20, 554–570.

M. Meijler et al. reviewed recent advances in the use of diazirines in photoaffinity labeling till 2012.

11

Recent Advances in Target Characterization and Identification by Photoaffinity Probes

Molecules, 2013, 18, 10425–10451.

Sang J. Chung et al. In this review authors have summarized most of the photoaffinity probes till 2013.

12

Photo-induced covalent cross-linking for the analysis of biomolecular interactions

Chem. Soc. Rev., 2013, 42, 3289–3301.

Andrew J. Wilson et al. In this review authors have summarized wide range of PAL functionalities involving the covalent cross-linking of biomolecules with the affinity tags.

13

From noncovalent to covalent bonds: a paradigm shift in target protein identification

Mol. BioSyst., 2013, 9, 544–550.

S B Park et al. have talked about different techniques to identify the target. These techniques include, Affinity-based target identification, Chemo-reactive group-based target identification, Photo reactive group-based target identification and FITGE-based target identification.

14

Photoactivatable Lipid Probes for Studying Biomembranes by Photoaffinity Labeling

Chem. Rev. 2013, 113, 7880–7929.

Ling Peng et al. have summarized Lipid Probes with Different Reactive Species for Photolabelling.

15

Photocrosslinking approaches to interactome mapping

Current Opinion in Chemical Biology 2013, 17, 90–101

Jennifer J Kohler et al. here authors have discussed the application of cell-based photocrosslinking to the study of specific problems in immune cell signaling, transcription, membrane protein dynamics, nucleocytoplasmic transport, and chaperone-assisted protein folding.

16

Diazirine-based multifunctional photo-probes for Affinity-based elucidation of protein-ligand interaction

Heterocycles 2014, 89 (12), 2697–2727.

Yasumaru Hatanaka et al. have reviewed reflects recent achievements in the chemistry and biological use of the diazirine based PAL reagents.

17

Photoaffinity labeling in target and binding-site identification

Future Med. Chem. 2015, 7(2), 159–183.

Ian Collins et al. have summarized the principles of PAL including probe design and experimental techniques for in vitro and live cell investigations.

18

Photoaffinity Probes for Identification of Carbohydrate-Binding Proteins

Asian J. Org. Chem. 2015, 4, 116–126.

Kaori Sakurai has mentioned the PAL for identification carbohydrate-binding proteins.

19

Genetically Encoded Photocrosslinkers for Identifying and Mapping Protein-Protein Interactions in Living Cells

IUBMB life, 2016, 68(11), 879–886.

Peng R. Chen et al. have reviewed photo-affinity unnatural amino acids that can be site-specifically incorporated into a protein of interest to covalently trap non-covalent PPIs under living conditions.

20

The Life of Pi Star: Exploring the Exciting and Forbidden Worlds of the Benzophenone Photophore

Chem. Rev. 2016, 116, 15284–15398.

Gyorgy Dormán et al. have reviewed, the “forbidden” (transitions) and excitation-activated world of photoinduced covalent attachment of BP photophores.