Table 1 Partion DEPs under UpHT vs UpC conditions

Up-regulated

454

CL232_Contig1_All

glutathione S-transferase [Chlorella variabilis]

gi|307,109,344|gb|EFN57582.1|

antioxidant activity

1426

Unigene12106_All

glutathione S-transferase [Coccomyxa subellipsoidea C-169]

gi|384,253,101|gb|EIE26576.1|

catalytic_activity

1483

CL2198_Contig2_All

glutathione S-transferase [Coccomyxa subellipsoidea C-169]

gi|384,253,101|gb|EIE26576.1|

catalytic_activity

695

Unigene6725_All

minus strand polyubiquitin [Aureococcus anophagefferens]

gi|323,454,622|gb|EGB10492.1|

antioxidant activity

2681

CL6691_Contig2_All

MnSOD [U. prolifera]

gi|149,275,665|gb|ABR23158.1|

antioxidant activity

202

Unigene40313_All

heat shock protein 90, cytosolic [Ostreococcus lucimarinus CCE9901]

gi|166,770|gb|AAA32822.1|

binding

984

gi|297,592,060|gb|ADI46845_1|

heat shock protein 70B [Volvox carteri f_ nagariensis]

gi|302,853,561|ref.|XP_002958295.1|

binding

2451

CL5666_Contig1_All

heat shock protein 90 [Ulva pertusa]

gi|371,940,442|dbj|BAL45643.1|

binding

2543

CL2081_Contig1_All

heat shock protein 90C [Chlamydomonas reinhardtii]

gi|159,490,014|ref.|XP_001702984.1|

binding

2944

gi|300,269,068|gb|EFJ53248_1|

heat shock protein Hsp70H [Volvox carteri f_ nagariensis]

gi|302,829,372|ref.|XP_002946253.1|

binding

3056

gi|158,270,891|gb|EDO96722_1|

heat shock protein 90C [Chlamydomonas reinhardtii]

gi|159,490,014|ref.|XP_001702984.1|

binding

3197

gi|254,558,246|gb|ACT67905_1|

heat shock protein 70 [Ulva pertusa]

gi|254,558,246|gb|ACT67905.1|

binding

4221

CL413_Contig1_All

minus strand heat shock protein 60 [Ulva pertusa]

gi|371,940,440|dbj|BAL45642.1|

binding

75

CL152_Contig5_All

ubiquitin-60S ribosomal protein L40 [Vitis vinifera]

gi|359,482,015|ref.|XP_002282071.2|

structural_molecule_activity

2429

Unigene16018_All

NADH:ubiquinone oxidoreductase 11 kDa subunit [Chlamydomonas reinhardtii]

gi|159,475,537|ref.|XP_001695875.1|

catalytic_activity

2470

gi|1,001,185,371|gb|AML80572_1|

NADH-ubiquinone oxidoreductase 49 kDa subunit (mitochondrion) [U. prolifera]

gi|49,147,198|ref.|YP_025791.1|

binding catalytic_activity

2717

Unigene42071_All

similar to ubiquitin conjugating enzyme E2 [Cyanidioschyzon merolae strain 10D]

gi|449,018,406|dbj|BAM81808.1|

binding catalytic_activity

4135

CL4653_Contig2_All

peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 [Coccomyxa subellipsoidea C-169]

gi|384,249,810|gb|EIE23291.1|

cell cell_part

3660

CL649_Contig6_All

Rubisco activase [Coccomyxa subellipsoidea C-169]

gi|384,253,108|gb|EIE26583.1|

binding

1212

CL492_Contig1_All

bifunctional sensory photoreceptor [Volvox carteri f_ nagariensis]

gi|302,844,634|ref.|XP_002953857.1|

Energy convert

622

gi|315,319,013|gb|ADU04518_1|

LhcSR [U. prolifera]

gi|315,319,013|gb|ADU04518.1|

Energy convert

621

gi|158,277,339|gb|EDP03108_1|

serine/threonine protein kinase 2 [Chlamydomonas reinhardtii]

gi|159,472,056|ref.|XP_001694172.1|

Signal

2807

Unigene25558_All

calcium-dependent protein kinase [Chlamydomonas reinhardtii]

gi|159,464,829|ref.|XP_001690644.1|

Signal

329

CL2614_Contig3_All

ArfB-family small GTPase [Coccomyxa subellipsoidea C-169]

gi|384,244,739|gb|EIE18237.1|

Signal

1431

Unigene44820_All

ras-related gtp-binding protein [Micromonas sp_ RCC299]

gi|255,075,683|ref.|XP_002501516.1|

Signal

2089

Unigene4025_All

minus strand ras-related protein Rab2BV [Coccomyxa subellipsoidea C-169]

gi|307,102,647|gb|EFN50917.1|

Signal

3066

gi|158,271,373|gb|EDO97193_1|

ARF-like GTPase [Chlamydomonas reinhardtii]

gi|159,488,198|ref.|XP_001702104.1|

Signal

63

Unigene7624_All

NDPK2a nucleotide diphosphate kinase 2 protein [Physcomitrella patens subsp_ patens]

gi|168,020,398|ref.|XP_001762730.1|

Signal

3025

CL5370_Contig1_All

adenylate kinase [Coccomyxa subellipsoidea C-169]

gi|384,247,647|gb|EIE21133.1|

Signal

1512

CL3463_Contig1_All

calcium-dependent protein kinase(CDPK)[Coccomyxa subellipsoidea C-169]

gi|384,245,250|gb|EIE18745.1|

Signal

3467

CL3910_Contig4_All

calcium-dependent protein kinase(CDPK)[Volvox carteri f_ nagariensis]

gi|384,245,250|gb|EIE18745.1|

Signal

4337

Unigene26962_All

calcium-dependent protein kinase(CDPK) [Chlamydomonas reinhardtii]

gi|159,464,829|ref.|XP_001690644.1|

Signal

3383

CL7329_Contig1_All

histidine-aspartic acid phosphotransferase [Chlamydomonas reinhardtii]

gi|159,463,834|ref.|XP_001690147.1|

Signal

1545

CL4735_Contig1_All

kinase-like protein-SnRK2 [Coccomyxa subellipsoidea C-169]

gi|384,245,989|gb|EIE19481.1|

Signal

4259

CL6485_Contig1_All

metacaspase type II [Chlamydomonas reinhardtii]

gi|159,467,293|ref.|XP_001691826.1|

catalytic_activity

1524

gi|28,076,780|gb|AAO31578_1|

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Ulva lactuca]

gi|28,076,780|gb|AAO31578.1|

Carbohydrate transport and metabolism

1650

gi|145,567,455|gb|ABP82085_1|

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Ulva sp_ WELT A027500]

gi|219,932,444|emb|CAR65339.1|

Carbohydrate transport and metabolism

3021

gi|158,282,407|gb|EDP08159_1|

triacylglycerol lipase-like protein(EDS1) [Chlamydomonas reinhardtii]

gi|159,476,166|ref.|XP_001696182.1|

Plant-pathogen interaction

Down-regulated

397

CL206_Contig2_All

elongation factor 2-like [Solanum lycopersicum]

gi|356,525,774|ref.|XP_003531498.1|

Response to stimulus

1080

Unigene25013_All

methionine sulfoxide reductase B [Ulva fasciata]

gi|197,631,364|gb|ACH70611.1|

Response to stimulus

1140

CL6594_Contig3_All

oxygen-evolving enhancer protein 1 precursor [Volvox carteri f_ nagariensis]

gi|302,846,662|ref.|XP_002954867.1|

Response to stimulus

1295

CL4649_Contig1_All

ferritin [Ulva fasciata]

gi|149,275,663|gb|ABR23157.1|

Response to stimulus

1603

Unigene17811_All

chloroplast stem-loop-binding protein [Chlamydomonas reinhardtii]

gi|159,464,355|ref.|XP_001690407.1|

Response to stimulus

1611

CL1851_Contig5_All

TPA_inf: chloroplast light-harvesting complex II protein precursor Lhcbm5 [Acetabularia acetabulum]

gi|145,079,356|tpg|DAA05911.1|

Response to stimulus

1686

gi|158,277,735|gb|EDP03502_1|

Adenylosuccinate synthetase, chloroplastic;

gi|159,469,564|ref.|XP_001692933.1|

Response to stimulus

1762

CL891_Contig1_All

actin [Ulva linza]

gi|363,992,274|gb|AEW46682.1|

Response to stimulus

1828

Unigene18752_All

putative early light-inducible protein 2 [Ulva linza]

gi|380,468,161|gb|AFD61608.1|

Response to stimulus

1855

CL7525_Contig1_All

chloroplast glycerolipid omega-3-fatty acid desaturase [Chlamydomonas reinhardtii]

gi|159,462,866|ref.|XP_001689663.1|

Response to stimulus

2532

gi|1,181,548|gb|AAA86855_1|

Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic;

gi|159,463,282|ref.|XP_001689871.1|

Response to stimulus

2584

Unigene27523_All

minus strand plastocyanin precursor [Ulva pertusa]

gi|48,526,878|gb|AAT45616.1|

Response to stimulus

2923

gi|344,012|dbj|BAA02024_1|

photosystem II D1 protein (chloroplast) [Pinus thunbergii]

gi|7,524,753|ref.|NP_042347.1|

Response to stimulus

3498

Unigene37824_All

minus strand tubulin beta [Nannochloropsis gaditana CCMP526]

gi|422,295,792|gb|EKU23091.1|

Response to stimulus

3524

gi|158,271,667|gb|EDO97482_1|

porphobilinogen deaminase [Chlamydomonas reinhardtii]

gi|159,486,921|ref.|XP_001701485.1|

Response to stimulus

3644

CL438_Contig1_All

fructose-1,6-bisphosphatase [Chlamydomonas reinhardtii]

gi|159,465,323|ref.|XP_001690872.1|

Response to stimulus

3749

CL930_Contig2_All

glutamate-1-semialdehyde aminotransferase [Chlamydomonas reinhardtii]

gi|384,247,824|gb|EIE21309.1|

Response to stimulus

3798

gi|288,816,175|gb|ADC54911_1|

oxygen-evolving enhancer protein, partial [Ulva sp_ EE2]

gi|288,816,175|gb|ADC54911.1|

Response to stimulus

1056

gi|323,320,892|gb|ADX36432_1|

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [U. prolifera]

gi|32,492,888|gb|AAP85534.1|

Carbohydrate transport and metabolism

1767

gi|145,567,588|gb|ABP82151_1|

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Ulva sp_ WELT A027397]

gi|159,475,703|ref.|XP_001695958.1|

Carbohydrate transport and metabolism

1854

Unigene19826_All

minus strand pyruvate orthophosphate dikinase [Ulva linza]

gi|255,076,895|ref.|XP_002502111.1|

Carbohydrate transport and metabolism

2044

CL7324_Contig1_All

glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like [Cucumis sativus]

gi|384,245,592|gb|EIE19085.1|

Carbohydrate transport and metabolism

2532

gi|1,181,548|gb|AAA86855_1|

glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic;

gi|323,320,892|gb|ADX36432.1|

Carbohydrate transport and metabolism

2561

CL2687_Contig1_All

minus strand pyruvate orthophosphate dikinase [U. prolifera]

gi|255,076,279|ref.|XP_002501814.1|

Carbohydrate transport and metabolism

2674

gi|145,567,931|gb|ABP82322_1|

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Ulva sp_ WELT A027743]

gi|449,475,837|ref.|XP_004154566.1|

Carbohydrate transport and metabolism

2812

CL1803_Contig1_All

phosphoglycerate kinase [Chlamydomonas reinhardtii]

gi|159,463,282|ref.|XP_001689871.1|

Carbohydrate transport and metabolism

2938

gi|342,316,037|gb|AEL22116_1|

pyruvate orthophosphate dikinase [Ulva linza]

gi|378,940,382|gb|AFC75637.1|

Carbohydrate transport and metabolism

3212

gi|145,568,009|gb|ABP82361_1|

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Ulva sp_ WELT A027348]

gi|145,568,333|gb|ABP82523.1|

Carbohydrate transport and metabolism

3644

CL438_Contig1_All

fructose-1,6-bisphosphatase [Chlamydomonas reinhardtii]

gi|342,316,037|gb|AEL22116.1|

Carbohydrate transport and metabolism

3884

CL5964_Contig1_All

minus strand starch branching enzyme II [Parachlorella kessleri]

gi|194,396,261|gb|ACF60500.1|

Carbohydrate transport and metabolism

1080

Unigene25013_All

methionine sulfoxide reductase B [Ulva fasciata]

gi|197,631,364|gb|ACH70611.1|

Posttranslational modification, protein turnover, chaperones

2047

gi|300,259,068|gb|EFJ43299_1|

molecular chaperone [Volvox carteri f_ nagariensis]

gi|302,848,253|ref.|XP_002955659.1|

Posttranslational modification, protein turnover, chaperones

2273

gi|158,279,996|gb|EDP05755_1|

signal peptide peptidase, partial [Chlamydomonas reinhardtii]

gi|159,464,533|ref.|XP_001690496.1|

Posttranslational modification, protein turnover, chaperones

2744

Unigene5984_All

thioredoxin x (ISS) [Ostreococcus tauri]

gi|308,804,023|ref.|XP_003079324.1|

Posttranslational modification, protein turnover, chaperones

3388

Unigene9950_All

thioredoxin dependent peroxidase [Chlamydomonas reinhardtii]

gi|159,489,214|ref.|XP_001702592.1|

Posttranslational modification, protein turnover, chaperones

4415

CL3087_Contig4_All

molecular chaperone [Volvox carteri f_ nagariensis]

gi|302,839,709|ref.|XP_002951411.1|

Posttranslational modification, protein turnover, chaperones

141

CL451_Contig4_All

diadenosine tetraphosphatase and related serine/threonine protein phosphatases[Chlorella variabilis]

gi|307,103,797|gb|EFN52054.1|

Signal transduction

mechanisms

242

CL5191_Contig2_All

serine/threonine protein phosphatase [Guillardia theta CCMP2712]

gi|348,671,120|gb|EGZ10941.1|

Signal transduction

mechanisms

250

Unigene7524_All

protein serine/threonine phosphatase 2C [Coccomyxa subellipsoidea C-169]

gi|307,104,872|gb|EFN53124.1|

Signal transduction

mechanisms

3622

CL6423_Contig1_All

minus strand protein tyrosine phosphatase [Ectocarpus siliculosus]

gi|299,116,693|emb|CBN74838.1|

Signal transduction

mechanisms

4212

CL4299_Contig1_All

serine/threonine protein phosphatase[Volvox carteri f_ nagariensis]

gi|302,851,958|ref.|XP_002957501.1|

Signal transduction

mechanisms

2947

Unigene205_All

phytoene dehydrogenase and related proteins[Chlorella variabilis]

gi|384,249,750|gb|EIE23231.1|

Secondary metabolites biosynthesis, transport

3019

gi|158,273,526|gb|EDO99315_1|

cytochrome P450, CYP85 clan, partial [Chlamydomonas reinhardtii]

gi|159,481,496|ref.|XP_001698815.1|

Secondary metabolites biosynthesis

3998

CL7806_Contig1_All

carotenoid cleavage dioxygenase [Chlamydomonas reinhardtii]

gi|159,474,908|ref.|XP_001695565.1|

Secondary metabolites biosynthesis

4156

CL6885_Contig2_All

phytoene dehydrogenase and related proteins [Volvox carteri f_ nagariensis]

gi|302,835,624|ref.|XP_002949373.1|

Secondary metabolites biosynthesis

397

CL206_Contig2_All

elongation factor 2-like [Solanum lycopersicum]

gi|356,525,774|ref.|XP_003531498.1|

Translation

4324

gi|452,119,419|gb|AGG09538_1|

elongation factor Tu, partial (chloroplast) [U. prolifera]

gi|452,119,405|gb|AGG09531.1|

Translation

756

Unigene5495_All

oxidoreductase [Coccomyxa subellipsoidea C-169]

gi|384,249,901|gb|EIE23381.1|

Energy production and conversion

1323

CL514_Contig1_All

glutathione reductase [Ulva fasciata]

gi|82,658,844|gb|ABB88584.1|

Energy production and conversion

1554

CL3939_Contig2_All

glutathione reductase [Ulva fasciata]

gi|82,658,844|gb|ABB88584.1|

Energy production and conversion

1808

Unigene43735_All

photosystem I subunit VII (chloroplast) [Trebouxiophyceae sp_ MX-AZ01]

gi|357,467,753|ref.|XP_003604161.1|

Energy production and conversion

2584

Unigene27523_All

plastocyanin precursor [Ulva pertusa]

gi|48,526,878|gb|AAT45616.1|

Energy production and conversion