Table 4 Top 10 of the uniquely represented proteins from S. bicolor genotypes at steady-state and upon C. partellus infestation
Key | Protein Accession No. | Protein Name | Function |
|---|---|---|---|
A - S. bicolor ICSV700 infested by C. partellus | |||
 23,819 | C5Y853 | similar to ATP synthase CF1 alpha subunit | Chloroplastic, correlation with spiny-ness |
 1056 | C5WWL7 | similar to Beta-caryophyllene synthase | Indirect defense against Lepidoptera by attracting predators |
 38 | C5YUK3 | Flap endonuclease 1-A | Catalysis of the cleavage of a 5′ flap structure in DNA, but not other DNA structures; processes the 5′ ends of Okazaki fragments in lagging strand DNA synthesis, Acts as a genome stabilization factor |
 107 | A1E9R4 | DNA-directed RNA polymerase subunit beta | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates, Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n + 1) |
 9314 | C5X5B2 | similar to ADP-ribosylation factor GTPase-activating protein AGD3 | Binds to and increases the activity of a GTPase, plasma membrane remodeling |
 19,695 | C5Y746 | similar to disease resistance RPP13-like protein 3 isoform X3 | Disease resistance against pathogens |
 28,942 | C5YHK1 | similar to Ankyrin repeat domain-containing protein 2 | Chloroplast targeting sequence binding |
 1890 | C5XAM0 | similar to ubiquitin-like | Protein turnover |
 20,222 | C5X7K7 | similar to RNA polymerase beta subunit | RNA polymerization |
 4393 | C5YLQ0 | Adenylyl cyclase-associated protein | Cyclase-associated protein 1-like, cytoskeleton organization, response to pathogen |
B - S. bicolor ICSV700 at steady state | |||
 3162 | C5YWC5 | similar to Proliferation-associated protein 2G4 | Change in state or activity of a cell or an organism as a result of a cytokinin stimulus |
 28,629 | C5Z4X4 | similar to reverse transcriptase, Brassinosteroid insensitive-1 like | Plant architecture |
 7943 | C5XJ50 | similar to Retrotransposon protein | Probable member of endonuclease, exonuclease, phosphatase family |
 13,397 | C5WSY0 | similar to Arginine decarboxylase | Drought tolerance, defense |
 27,809 | C5XAT9 | Histone H2A | DNA binding, chromatin silencing |
 2862 | C5XTG6 | Nitrate reductase | Cell signaling & survival under stress |
 11,807 | C5WU06 | similar to FACT complex subunit SPT16 | Histone binding and remodeling outside the context of DNA replication |
 25,101 | C5X957 | Ribosomal protein L15 | Structural constituent of ribosome, Cytoplasmic translation |
 14,173 | C5WQ44 | similar to enolase | Phosphopyruvate hydratase activity |
 16,161 | C5YDV5 | similar to putative quinone oxidoreductase | Oxidoreductase activity, chloroplastic |
C - S. bicolor IS2205 infested by C. partellus | |||
 29,614 | C5YIU1 | similar to Monogalactosyldiacyl glycerol synthase 2 | Thylakoid membrane biogenesis under stress |
 13,788 | C5YMZ5 | similar to Zinc finger CCCH domain-containing protein 55-like | ABA biosynthesis, drought, post-transcriptional regulation of gene expression |
 9243 | C5WNH3 | similar to ATP binding protein | Protein kinase activity, Serine/Threonine protein kinase STY46 like |
 5008 | C5YGI4 | similar to thiazole synthase | ADP binding, Cell wall integrity, and stress response component 1-like |
 25,363 | C5YJ73 | similar to Ubiquitin and WLM domain-containing protein | Ubiquitin and WLM domain-containing metalloprotease |
 5014 | C5XXC0 | similar to Protein kinase domain-containing protein | Triggered in response to the presence of a foreign body or the occurrence of an injury, Introducing a phosphate group on to a protein, ATP binding, Cysteine-rich receptor-like protein kinase 26 |
 702 | C5X8K4 | similar to disease-resistant protein RPP-13 like 1 | Disease resistance protein against pathogen |
 17,789 | C5Z5B4 | similar to 26S protease regulatory subunit 6A-like protein | ATP binding, Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs), 26S protease regulatory subunit 6A homolog |
 19,253 | C5YVH3 | 60S acidic ribosomal protein P0 | Ribosomal subunit rRNA binding, Cytoplasmic translation |
 21,882 | C6JSV0 | similar to Chitinase | Catalysis of the hydrolysis of (1- > 4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins |
D - S. bicolor IS2205 at steady state | |||
 28,234 | C5Y227 | similar to Indole-3-acetic acid-amido synthetase GH3.3 | Synthesis of IAA-conjugates, a mechanism to cope up with excess auxin |
 22,121 | C5X8X8 | similar to AT-hook motif-containing protein, Helicase | NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix, Process of restoring DNA after damage, Telomere maintenance, ATP-dependent DNA helicase PIF1-like |
 125 | C5XNN6 | Thiamine thiazole synthase 1, chloroplastic | Involved in the biosynthesis of the thiamine precursor thiazole, Suicide enzyme, Additional roles in adaptation to various stress conditions and DNA damage tolerance |
 6474 | C5WWV5 | similar to Inactive ubiquitin carboxyl-terminal hydrolase 53 | Thiol-dependent ubiquitinyl hydrolase activity, protein deubiquitination, inactive ubiquitin carboxyl-terminal hydrolase 53 |
 16,964 | C5YS29 | similar to Diaminopimelate decarboxylase | Diaminopimelate decarboxylase activity, meso-2,6-diaminopimelate + H(+) = L-lysine + CO(2), systemic acquires resistance |
 31,822 | C5XSW5 | Glutaredoxin-like protein | Photooxidative stress, antioxidant activity |
 19,098 | C5Z949 | similar to RING zinc finger domain superfamily protein | Ubiquitin specific protease binding, ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1 |
 2715 | C5XIX0 | similar to NEFA-interacting nuclear protein NIP30 | Protein FAM192A isoform X1 |
 23,386 | C5Y1Y1 | Peroxidase | 2 phenolic donor + H2O2 = 2 phenoxyl radical of the donor + 2 H2O |
 29,401 | C5Z7K8 | Pyruvate dehydrogenase E1 component subunit alpha | Catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2 |
E - S. bicolor Swarna infested by C. partellus | |||
 2587 | C5XAW9 | Serine/threonine-protein kinase | ATP + a protein = ADP + a phosphoprotein, reactions triggered in prevention/recovery from the infection caused by the attack |
 21,100 | C5XLE9 | similar to Photosystem II CP47 reaction center protein | Chlorophyll-binding, Photosynthetic ETS, Similar to Photosystem II CP47 chlorophyll apoprotein |
 21,351 | C5XXY1 | similar to Serine-threonine kinase receptor-associated protein | Involved in defense |
 13,794 | C5YV23 | similar to Adenylate isopentenyl transferase-like | Cytokinin biosynthesis |
 23,585 | C5WW05 | similar to Triacylglycerol lipase SDP1 | Hydrolase activity, Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate, membrane protein homeostasis |
 17,550 | C5YTB0 | similar to Inosine-5′-monophosphate dehydrogenase, Kinesin-like protein | Serine/Threonine Kinase activity |
 6258 | C5YWV3 | similar to UDP-D-glucuronate decarboxylase |  |
 349 | C5XT35 | NADP-dependent D-sorbitol-6-phosphate dehydrogenase | Oxidoreductase activity, sorbitol metabolism, development |
 28,758 | C5Y3U1 | similar to BOI-related E3 ubiquitin-protein ligase 1 | Abiotic stress tolerance, protein turnover |
 13,628 | C5YHS5 | similar to 5′-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 | Catalytic activity, nucleoside metabolic process |
F - S. bicolor Swarna at steady state | |||
 17,459 | C5WPC8 | similar to MAR-binding protein | The nuclear envelope protein, development |
 18,191 | C5Y2G1 | similar to Filamin B like protein | Connects cell membrane constituents to actin filaments |
 23,144 | C5X4Q7 | Histone H2B | DNA binding, Nucleosome assembly |
 30,485 | C5XZI6 | similar to B-cell receptor-associated protein 31-like containing protein | ER to Golgi vesicle-mediated transport, Intracellular protein transport, B cell receptor-associated protein 31 |
 4299 | C5YXD6 | similar to Retrotransposon protein | Nucleic acid-binding, zinc ion binding, bZIP like protein |
 16,841 | C5YBM1 | Carboxypeptidase | Serine-type carboxypeptidase activity |
 7517 | C5Z7H3 | similar to Putative pentatricopeptide repeat-containing protein | Zinc ion binding, RNA binding, splicing |
 14,188 | C5X6D0 | Lon protease homolog, mitochondrial | ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix, protein homeostasis |
 21,520 | C5XXE4 | Similar to the nuclear mitotic apparatus protein 1 | Mitosis |
 2898 | C5Y2Y9 | similar to Clathrin heavy chain 1 | Present in a coat of vesicles |