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Fig. 6 | Proteome Science

Fig. 6

From: A combined protein toxin screening based on the transcriptome and proteome of Solenopsis invicta

Fig. 6

Sequence alignment, 3D modeling and phylogenetic analysis of Venom prothrombin activator hopsarin-D. A Putative sequence TRINITY_DN9654_c1_g6 was aligned with the template (PDB ID: 4BXW). At the bottom of columns, asterisks (*) showed conserved positions, colons (:) showed conserved substitutions and points (.) showed non-conserved substitutions. Grey line, green bend, blue banded arrowhead, and red solenoid represent coil, turn, sheet, and helix, respectively. Different fragments were marked by red framework. B 3D modeling was modeled by SWISS-MODEL and viewed by Discovery Studio 4.5. The color grey, green, blue, and red represents coil, turn, sheet, and helix, respectively. The differences of TRINITY_DN9654_c1_g6 compared with the template (PDB ID: 4BXW) were marked with black font. C The phylogenetic tree including sequence TRINITY_DN9654_c1_g6 and ten other sequences from different species was constructed by using MEGA 7 with the Neighbor-Joining method. Putative sequence, Myrmicinae, Dorylinae, and Pseudomyrmecinae were marked as red, green, pink, and light blue circles, respectively

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