Proteomics analysis of differentially expressed proteins in chicken trachea and kidney after infection with the highly virulent and attenuated coronavirus infectious bronchitis virus in vivo

Cao, Zhongzan; Han, Zongxi; Shao, Yuhao; Liu, Xiaoli; Sun, Junfeng; Yu, Demin; Kong, Xiangang; Liu, Shengwang

doi:10.1186/1477-5956-10-24

Proteome Science

Table 4 Differential abundance changed proteins in kidney from chicken infected with IBV ck/CH/LDL/97I P₅ and ck/CH/LDL/97I P₁₁₅

From: Proteomics analysis of differentially expressed proteins in chicken trachea and kidney after infection with the highly virulent and attenuated coronavirus infectious bronchitis virus in vivo

Master ID^a	Protein description	Accession no.^b	Protein score	Protein score CI%^c	Mw (Da)	pI	Average ratio and p-value
							P ₅ -infected/control								P ₁₁₅ -infected/control
							4 dpi		7 dpi		14 dpi		21 dpi		4 dpi		7 dpi		14 dpi		21 dpi
							ratio	p	ratio	p	ratio	p	ratio	p	ratio	p	ratio	p	ratio	p	ratio	p
496	aldehyde dehydrogenase 4 family, member A1	gi\|118101121	1010	100	112936	5.4			0.56	0.009							0.85	0.031
662	aldehyde dehydrogenase 4 family, member A1	gi\|118101121	890	100	112936	5.4					1.03	0.84							1.59	0.015
452	alpha-enolase	gi\|46048768	353	100	47617.5	6.17	1.25	0.14							1.7	0.003
821, 1088	alpha-tropomyosin of smooth muscle (TPM1)	gi\|833618	94	99.999	32962.7	4.67			2.22	0.003							1.16	0.46
1977	apolipoprotein A-I (APOA1)	gi\|211159	703	100	30673.2	5.58							0.97	0.31							1.58	0
1262	chain A, crystal structures of chicken annexin V in complex with Ca²⁺ (ANXA5)	gi\|62738641	728	100	36158.6	5.61			2.04	0.004							1.1	0.75
983, 784	chain C, crystal structure of native chicken fibrinogen	gi\|8569623	921	100	47485.9	5.4					1.69	0.002	1.24	0.034					1.07	0.35	0.76	0.006
1926	low molecular weight phosphotyrosine proteinphosphatase (TCP1)	gi\|86129490	304	100	18640.2	6.81			6.34	0.045							0.74	0.16
1847	manganese-containing superoxide dismutase precursor (MNSOD)	gi\|12034955	258	100	25158.7	8.6	1.52	0.015							1.12	0.022
1970	nucleoside diphosphate kinase	gi\|2827446	445	100	17542	7.11			4.68	0.003							1.48	0.81
293	phosphoenolpyruvate carboxykinase (EC 4.1.1.32)	gi\|212538	492	100	70224.3	6.1	1.15	0.047							1.78	0
665	similar to aflatoxin aldehyde reductase	gi\|118101125	286	100	36943.4	6.76			2.61	0.004							1.28	0.059
789	similar to betaine homocysteine methyltransferase	gi\|50755288	1010	100	45552.1	7.56			2.51								1.41
582	glutamate dehydrogenase 1, mitochondrial	gi\|118534	339	100	56075.4	8.48			1.74	0.051							1.06	0.17
1461, 2026	similar to methyltransferase 24 (MET24)	gi\|50750103	556	100	30640.5	6	0.72	0.002			1.25	0.074			1.09	0.066			0.42	0
987	sulfotransferase	gi\|45384226	265	100	36333.5	5.89			4.53	0.01							0.98	0.85
1650	triosephosphate isomerase (EC 5.3.1.1)	gi\|212774	1290	100	26831.9	6.71	1.51	0.009							1.07	0.43

a) Match ID represents unique numbers assigned to each spot in the matched standard of Ettan™ DeCyder 2D v6.5 software
b) Accession no. is the MASCOT result of MALDI-TOF/TOF searched from the NCBInr database
c) The criterion for successful identification of a protein is a protein score confidence interval (C.I. %) for PMF and MS/MS data ≥ 95%

Back to article page

ISSN: 1477-5956

Contact us

General enquiries: journalsubmissions@springernature.com