Proteomic analysis of plasma membranes isolated from undifferentiated and differentiated HepaRG cells

Sokolowska, Izabela; Dorobantu, Cristina; Woods, Alisa G; Macovei, Alina; Branza-Nichita, Norica; Darie, Costel C

doi:10.1186/1477-5956-10-47

Proteome Science

Table 1 List with the proteins that were differentially identified by LC-MS/MS analysis of the plasma membranes of undifferentiated (−) and differentiated (+) cells (experiment #1)

From: Proteomic analysis of plasma membranes isolated from undifferentiated and differentiated HepaRG cells

	Proteins identified only in (-) cells
Protein Accession #	Protein_description
gi\|28614	aldolase A [Homo sapiens]
gi\|134665	RecName: Full=superoxidase dismutase [Mn], mitochondrial, Flags: prescursor
gi\|179930	carboxylesterase [Homo sapiens]
gi\|2906146	malate dehydrogenase precursor [Homo sapiens]
gi\|31645	glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]
gi\|205830271	RecName: Full=Putative annexin A2-like protein; AltName: Full=Annexin A2 pseudogene 2
gi\|30841303	manganese-containing superoxide dismutase [Homo sapiens]
gi\|40068518	6-phosphogluconate dehydrogenase, decarboxylating [Homo sapiens]
gi\|15012080	ACAT1 protein - Acetyl-CoA acetyltransferase [Homo sapiens]
gi\|1723158	dihydrodiol dehydrogenase/bile acid-binding protein [Homo sapiens]
gi\|134133226	POTE ankyrin domain family member E [Homo sapiens]
gi\|4502013	adenylate kinase 2, mitochondrial isoform a [Homo sapiens]
gi\|312137	fructose bisphosphate aldolase [Homo sapiens]
gi\|5802974	thioredoxin-dependent peroxide reductase, mitochondrial isoform a precursor [Homo sapiens]
gi\|257476	glutathione S-transferase A2 subunit [Homo sapiens]
gi\|809185	Chain A, The Effect Of Metal Binding On The Structure Of Annexin V And Implications For Membrane Binding
gi\|17389815	Triosephosphate isomerase 1 [Homo sapiens]
gi\|511635	delta3, delta2-enoyl-CoA isomerase [Homo sapiens]
gi\|56554357	Chain A, Binary Structure Of Human Decr Solved By Semet Sad.
gi\|148733138	ubiquitously transcribed tetratricopeptide repeat protein Y-linked transcript variant 35 [Homo sapiens]
	Proteins identified only in (+) cells
gi\|30749518	Chain A, Crystal Structure Of Human Liver Carboxylesterase In Complex With Tacrine
gi\|13937981	Peptidylprolyl isomerase A (cyclophilin A) [Homo sapiens]
gi\|37267	transketolase [Homo sapiens]
gi\|693933	2-phosphopyruvate-hydratase alpha-enolase [Homo sapiens]
gi\|2981743	Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
gi\|35505	pyruvate kinase [Homo sapiens]
gi\|31645	glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]
gi\|1633054	Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
gi\|860986	protein disulfide isomerase [Homo sapiens]
gi\|291463384	Chain K, Acetyl-Cypa:cyclosporine Complex
gi\|4557305	fructose-bisphosphate aldolase A isoform 1 [Homo sapiens]
gi\|6009628	brain carboxylesterase hBr3 [Homo sapiens]
gi\|999892	Chain A, Crystal Structure Of Recombinant Human Triosephosphate Isomerase At 2.8 Angstroms Resolution.
gi\|306891	90kDa heat shock protein [Homo sapiens]
gi\|4505591	peroxiredoxin-1 [Homo sapiens]
gi\|61656603	Heat shock protein HSP 90 -alpha 2
gi\|55959290	annexin A1 [Homo sapiens]
gi\|1710248	protein disulfide isomerase-related protein 5 [Homo sapiens]
gi\|5729877	heat shock cognate 71 kDa protein isoform 1 [Homo sapiens]
gi\|62088648	tumor rejection antigen (gp96) 1 variant [Homo sapiens]
gi\|4505763	phosphoglycerate kinase 1 [Homo sapiens]
gi\|386758	GRP78 precursor [Homo sapiens]
gi\|2906146	malate dehydrogenase precursor [Homo sapiens]
gi\|34709	manganese superoxide dismutase (MnSOD) [Homo sapiens]
gi\|32189394	ATP synthase subunit beta, mitochondrial precursor [Homo sapiens]
gi\|4505753	phosphoglycerate mutase 1 [Homo sapiens]
gi\|21361176	retinal dehydrogenase 1 [Homo sapiens]
gi\|438069	thiol-specific antioxidant protein [Homo sapiens]
gi\|178375	aldehyde dehydrogenase [Homo sapiens]
gi\|930063	neurone-specific enolase [Homo sapiens]
gi\|5453549	peroxiredoxin-4 precursor [Homo sapiens]
gi\|11128019	cytochrome c [Homo sapiens]
gi\|458470	carboxylesterase [Homo sapiens]
gi\|1065111	Chain A, Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 amino acid Peptide
	Comprising Its Target Site In Human Nfkb
gi\|312137	fructose bisphosphate aldolase [Homo sapiens]
gi\|913159	neuropolypeptide h3 [human, brain, Peptide, 186 aa]
gi\|189238	neuroleukin [Homo sapiens]
gi\|38648667	Fatty acid synthase [Homo sapiens]
gi\|4503143	cathepsin D preproprotein [Homo sapiens]
gi\|1065322	Chain A, A Surface Mutant (G82r) Of A Human Alpha-Glutathione S- Transferase
gi\|6729803	Chain A, Heat-Shock 70kd Protein 42kd Atpase N-Terminal Domain
gi\|189617	protein PP4-X [Homo sapiens]
gi\|4758304	protein disulfide-isomerase A4 precursor [Homo sapiens]
gi\|1040689	Human Diff6,H5,CDC10 homologue [Homo sapiens]
gi\|544759	biliverdin-IX beta reductase isozyme I {EC 1.3.1.24} [human, liver, Peptide, 204 aa]
gi\|62897129	heat shock 70kDa protein 8 isoform 1 variant [Homo sapiens]
gi\|556516	dihydrodiol dehydrogenase isoform DD1 [Homo sapiens]
gi\|1421609	Chain A, X-Ray Structure Of Nm23 Human Nucleoside Diphosphate Kinase B Complexed With Gdp At 2 Angstroms Resolution
gi\|20070125	protein disulfide-isomerase precursor [Homo sapiens]
gi\|729433	RecName: Full=Protein disulfide-isomerase A3; AltName: Full=58 kDa glucose-regulated protein; AltName:
gi\|4757900	calreticulin precursor [Homo sapiens]
gi\|5031857	L-lactate dehydrogenase A chain isoform 1 [Homo sapiens]
gi\|1082886	tumor necrosis factor type 1 receptor associated protein TRAP-1 - human
gi\|18204869	TUBA1B protein [Homo sapiens]
gi\|5802966	destrin isoform a [Homo sapiens]
gi\|119602577	plectin 1, intermediate filament binding protein 500kDa, isoform CRA_b [Homo sapiens]
gi\|41322916	plectin isoform 1 [Homo sapiens]
gi\|5174539	malate dehydrogenase, cytoplasmic isoform 2 [Homo sapiens]
gi\|4503483	elongation factor 2 [Homo sapiens]
gi\|3212355	Chain A, P11 (S100a10), Ligand Of Annexin Ii
gi\|188492	heat shock-induced protein [Homo sapiens]
gi\|21465695	Chain A, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And Testosterone
gi\|179930	carboxylesterase [Homo sapiens]
gi\|4758012	clathrin heavy chain 1 [Homo sapiens]
gi\|35830	ubiquitin activating enzyme E1 [Homo sapiens]
gi\|4507953	14-3-3 protein zeta/delta [Homo sapiens]
gi\|662841	heat shock protein 27 [Homo sapiens]
gi\|4505257	moesin [Homo sapiens]
gi\|4507357	transgelin-2 [Homo sapiens]
gi\|4506467	radixin [Homo sapiens]
gi\|6457378	cytovillin 2 [Homo sapiens]
gi\|4505751	profilin-2 isoform b [Homo sapiens]
gi\|6063147	ezrin [Homo sapiens]
gi\|61104911	heat shock protein 90Bb [Homo sapiens]
gi\|325533983	Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin
gi\|119590453	EDAR-associated death domain, isoform CRA_a [Homo sapiens]
gi\|311772317	Chain A, Crystal Structure Of Human Nad Kinase
gi\|4504067	aspartate aminotransferase, cytoplasmic [Homo sapiens]
gi\|5630077	similar to ALR; similar to AAC51735 (PID:g2358287) [Homo sapiens]
gi\|896473	iron-responsive regulatory protein/iron regulatory protein 1 [Homo sapiens]
gi\|5803225	14-3-3 protein epsilon [Homo sapiens]
gi\|4826643	annexin A3 [Homo sapiens]
gi\|332841153	PREDICTED: heat shock protein 105 kDa isoform 1 [Pan troglodytes]
	Proteins identified in(-) and (+) cells
gi\|4757756	annexin A2 isoform 2 [Homo sapiens]
gi\|181250	cyclophilin [Homo sapiens]
gi\|291463380	Chain B, Free Acetyl-Cypa Orthorhombic Form
gi\|215273984	RecName: Full=Putative inactive carboxylesterase 4; AltName: Full=Inactive carboxylesterase 1 pseudogene 1
gi\|809185	Chain A, The Effect Of Metal Binding On The Structure Of Annexin V And Implications For Membrane Binding
gi\|4507913	wiskott-Aldrich syndrome protein family member 1
gi\|438069	thiol-specific antioxidant protein [Homo sapiens]

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ISSN: 1477-5956

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