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Table 1 List with the proteins that were differentially identified by LC-MS/MS analysis of the plasma membranes of undifferentiated (−) and differentiated (+) cells (experiment #1)

From: Proteomic analysis of plasma membranes isolated from undifferentiated and differentiated HepaRG cells

  Proteins identified only in (-) cells
Protein Accession # Protein_description
gi|28614 aldolase A [Homo sapiens]
gi|134665 RecName: Full=superoxidase dismutase [Mn], mitochondrial, Flags: prescursor
gi|179930 carboxylesterase [Homo sapiens]
gi|2906146 malate dehydrogenase precursor [Homo sapiens]
gi|31645 glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]
gi|205830271 RecName: Full=Putative annexin A2-like protein; AltName: Full=Annexin A2 pseudogene 2
gi|30841303 manganese-containing superoxide dismutase [Homo sapiens]
gi|40068518 6-phosphogluconate dehydrogenase, decarboxylating [Homo sapiens]
gi|15012080 ACAT1 protein - Acetyl-CoA acetyltransferase [Homo sapiens]
gi|1723158 dihydrodiol dehydrogenase/bile acid-binding protein [Homo sapiens]
gi|134133226 POTE ankyrin domain family member E [Homo sapiens]
gi|4502013 adenylate kinase 2, mitochondrial isoform a [Homo sapiens]
gi|312137 fructose bisphosphate aldolase [Homo sapiens]
gi|5802974 thioredoxin-dependent peroxide reductase, mitochondrial isoform a precursor [Homo sapiens]
gi|257476 glutathione S-transferase A2 subunit [Homo sapiens]
gi|809185 Chain A, The Effect Of Metal Binding On The Structure Of Annexin V And Implications For Membrane Binding
gi|17389815 Triosephosphate isomerase 1 [Homo sapiens]
gi|511635 delta3, delta2-enoyl-CoA isomerase [Homo sapiens]
gi|56554357 Chain A, Binary Structure Of Human Decr Solved By Semet Sad.
gi|148733138 ubiquitously transcribed tetratricopeptide repeat protein Y-linked transcript variant 35 [Homo sapiens]
  Proteins identified only in (+) cells
gi|30749518 Chain A, Crystal Structure Of Human Liver Carboxylesterase In Complex With Tacrine
gi|13937981 Peptidylprolyl isomerase A (cyclophilin A) [Homo sapiens]
gi|37267 transketolase [Homo sapiens]
gi|693933 2-phosphopyruvate-hydratase alpha-enolase [Homo sapiens]
gi|2981743 Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
gi|35505 pyruvate kinase [Homo sapiens]
gi|31645 glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]
gi|1633054 Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
gi|860986 protein disulfide isomerase [Homo sapiens]
gi|291463384 Chain K, Acetyl-Cypa:cyclosporine Complex
gi|4557305 fructose-bisphosphate aldolase A isoform 1 [Homo sapiens]
gi|6009628 brain carboxylesterase hBr3 [Homo sapiens]
gi|999892 Chain A, Crystal Structure Of Recombinant Human Triosephosphate Isomerase At 2.8 Angstroms Resolution.
gi|306891 90kDa heat shock protein [Homo sapiens]
gi|4505591 peroxiredoxin-1 [Homo sapiens]
gi|61656603 Heat shock protein HSP 90 -alpha 2
gi|55959290 annexin A1 [Homo sapiens]
gi|1710248 protein disulfide isomerase-related protein 5 [Homo sapiens]
gi|5729877 heat shock cognate 71 kDa protein isoform 1 [Homo sapiens]
gi|62088648 tumor rejection antigen (gp96) 1 variant [Homo sapiens]
gi|4505763 phosphoglycerate kinase 1 [Homo sapiens]
gi|386758 GRP78 precursor [Homo sapiens]
gi|2906146 malate dehydrogenase precursor [Homo sapiens]
gi|34709 manganese superoxide dismutase (MnSOD) [Homo sapiens]
gi|32189394 ATP synthase subunit beta, mitochondrial precursor [Homo sapiens]
gi|4505753 phosphoglycerate mutase 1 [Homo sapiens]
gi|21361176 retinal dehydrogenase 1 [Homo sapiens]
gi|438069 thiol-specific antioxidant protein [Homo sapiens]
gi|178375 aldehyde dehydrogenase [Homo sapiens]
gi|930063 neurone-specific enolase [Homo sapiens]
gi|5453549 peroxiredoxin-4 precursor [Homo sapiens]
gi|11128019 cytochrome c [Homo sapiens]
gi|458470 carboxylesterase [Homo sapiens]
gi|1065111 Chain A, Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 amino acid Peptide
  Comprising Its Target Site In Human Nfkb
gi|312137 fructose bisphosphate aldolase [Homo sapiens]
gi|913159 neuropolypeptide h3 [human, brain, Peptide, 186 aa]
gi|189238 neuroleukin [Homo sapiens]
gi|38648667 Fatty acid synthase [Homo sapiens]
gi|4503143 cathepsin D preproprotein [Homo sapiens]
gi|1065322 Chain A, A Surface Mutant (G82r) Of A Human Alpha-Glutathione S- Transferase
gi|6729803 Chain A, Heat-Shock 70kd Protein 42kd Atpase N-Terminal Domain
gi|189617 protein PP4-X [Homo sapiens]
gi|4758304 protein disulfide-isomerase A4 precursor [Homo sapiens]
gi|1040689 Human Diff6,H5,CDC10 homologue [Homo sapiens]
gi|544759 biliverdin-IX beta reductase isozyme I {EC 1.3.1.24} [human, liver, Peptide, 204 aa]
gi|62897129 heat shock 70kDa protein 8 isoform 1 variant [Homo sapiens]
gi|556516 dihydrodiol dehydrogenase isoform DD1 [Homo sapiens]
gi|1421609 Chain A, X-Ray Structure Of Nm23 Human Nucleoside Diphosphate Kinase B Complexed With Gdp At 2 Angstroms Resolution
gi|20070125 protein disulfide-isomerase precursor [Homo sapiens]
gi|729433 RecName: Full=Protein disulfide-isomerase A3; AltName: Full=58 kDa glucose-regulated protein; AltName:
gi|4757900 calreticulin precursor [Homo sapiens]
gi|5031857 L-lactate dehydrogenase A chain isoform 1 [Homo sapiens]
gi|1082886 tumor necrosis factor type 1 receptor associated protein TRAP-1 - human
gi|18204869 TUBA1B protein [Homo sapiens]
gi|5802966 destrin isoform a [Homo sapiens]
gi|119602577 plectin 1, intermediate filament binding protein 500kDa, isoform CRA_b [Homo sapiens]
gi|41322916 plectin isoform 1 [Homo sapiens]
gi|5174539 malate dehydrogenase, cytoplasmic isoform 2 [Homo sapiens]
gi|4503483 elongation factor 2 [Homo sapiens]
gi|3212355 Chain A, P11 (S100a10), Ligand Of Annexin Ii
gi|188492 heat shock-induced protein [Homo sapiens]
gi|21465695 Chain A, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And Testosterone
gi|179930 carboxylesterase [Homo sapiens]
gi|4758012 clathrin heavy chain 1 [Homo sapiens]
gi|35830 ubiquitin activating enzyme E1 [Homo sapiens]
gi|4507953 14-3-3 protein zeta/delta [Homo sapiens]
gi|662841 heat shock protein 27 [Homo sapiens]
gi|4505257 moesin [Homo sapiens]
gi|4507357 transgelin-2 [Homo sapiens]
gi|4506467 radixin [Homo sapiens]
gi|6457378 cytovillin 2 [Homo sapiens]
gi|4505751 profilin-2 isoform b [Homo sapiens]
gi|6063147 ezrin [Homo sapiens]
gi|61104911 heat shock protein 90Bb [Homo sapiens]
gi|325533983 Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin
gi|119590453 EDAR-associated death domain, isoform CRA_a [Homo sapiens]
gi|311772317 Chain A, Crystal Structure Of Human Nad Kinase
gi|4504067 aspartate aminotransferase, cytoplasmic [Homo sapiens]
gi|5630077 similar to ALR; similar to AAC51735 (PID:g2358287) [Homo sapiens]
gi|896473 iron-responsive regulatory protein/iron regulatory protein 1 [Homo sapiens]
gi|5803225 14-3-3 protein epsilon [Homo sapiens]
gi|4826643 annexin A3 [Homo sapiens]
gi|332841153 PREDICTED: heat shock protein 105 kDa isoform 1 [Pan troglodytes]
  Proteins identified in(-) and (+) cells
gi|4757756 annexin A2 isoform 2 [Homo sapiens]
gi|181250 cyclophilin [Homo sapiens]
gi|291463380 Chain B, Free Acetyl-Cypa Orthorhombic Form
gi|215273984 RecName: Full=Putative inactive carboxylesterase 4; AltName: Full=Inactive carboxylesterase 1 pseudogene 1
gi|809185 Chain A, The Effect Of Metal Binding On The Structure Of Annexin V And Implications For Membrane Binding
gi|4507913 wiskott-Aldrich syndrome protein family member 1
gi|438069 thiol-specific antioxidant protein [Homo sapiens]