Prediction of DNA-binding proteins from relational features

Table 5 The most informative patterns for ZF

	Structural pattern	N
1	res(A,cys), res(B,cys), res(C,his), res(D,his), res(E,arg), dist(A,B,6.0), dist(A,C,8.0), dist(A,D,10.0), dist(A,E,10.0)	10
2	res(A,cys), res(B,his), res(C,his), res(D,arg), dist(A,B,8.0), dist(A,C,10.0), dist(A,D,10.0)	10
3	res(A,his), res(B,his), res(C,cys), res(D,arg), dist(A,B,8.0), dist(A,C,8.0), dist(A,D,4.0)	10
4	res(A,cys), res(B,his), res(C,his), res(D,phe), dist(A,B,8.0), dist(A,C,10.0), dist(A,D,8.0)	9
5	res(A,his), res(B,cys), res(C,his), res(D,arg), dist(A,B,10.0), dist(A,C,8.0), dist(A,D,6.0)	9
6	res(A,his), res(B,cys), res(C,his), res(D,arg), dist(A,B,10.0), dist(A,C,8.0), dist(A,D,4.0)	8
7	res(A,cys), res(B,his), res(C,his), dist(A,B,8.0), dist(A,C,10.0)	8
8	res(A,cys), res(B,cys), res(C,his), res(D,his), res(E,phe), dist(A,B,6.0), dist(A,C,8.0), dist(A,D,10.0), dist(A,E,8.0)	8
9	res(A,his), res(B,cys), res(C,his), res(D,phe), res(E,cys), dist(A,B,10.0), dist(A,C,8.0), dist(A,D,10.0), dist(A,E,8.0)	5
10	res(A,his), res(B,cys), res(C,arg), res(D,his), dist(A,B,10.0), dist(A,C,10.0), dist(A,D,8.0)	3

The ten most informative structural patterns according to the χ² criterion for the dataset of Zinc Finger proteins. N is the number of folds, for which the actual pattern was one of the ten best patterns.

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