Table 1 The number of short polypeptide clusters obtained with various thresholds for HMMsearch, cluster filtering and cluster merge.
Threshold | Merge with at least one overlap | Merge with at least 10% overlap | Merge with at least 20% overlap | ||||||
|---|---|---|---|---|---|---|---|---|---|
|  | 10 −10 | 10 −15 | 10 −20 | 10 −10 | 10 −15 | 10 −20 | 10 −10 | 10 −15 | 10 −20 |
20 | 4188 | 5324 | 5326 | 4443 | 5807 | 5797 | 4760 | 6443 | 6399 |
50 | 4188 | 5330 | 5332 | 4471 | 5839 | 5822 | 4793 | 6475 | 6427 |
100 | 4188 | 5330 | 5332 | 4479 | 5848 | 5831 | 4803 | 6485 | 6432 |
No Filter | 4189 | 5331 | 5333 | 4486 | 5856 | 5840 | 4812 | 6494 | 6440 |