Using multitask classification methods to investigate the kinase-specific phosphorylation sites

Table 4 Selected features by MT-Feat3

	Subset 1 (20 features)	Subset 2 (26 features)
Backbone electrostatic interactions	AVBF000101*#	AVBF000101*#
	AVBF000102*#	AVBF000102*#
	AVBF000104*#	AVBF000104*#
	AVBF000105*#	AVBF000105*#
	AVBF000106*	AVBF000106*
	AVBF000107*#	AVBF000107*#
	AVBF000108*#	AVBF000108*#
	AVBF000109*	AVBF000109*#
Hydrophobicity	ROSM880104*	ROSM880104*
	ROSM880105*#	ROSM880105*
Apparent partition energies	GUYH850103*	GUYH850103*
Negative charge	FAUJ880112*	FAUJ880112*
Fractional occurrence in left helix regions	RACS820103*	RACS820103*
Side chain conformation others	YANJ020101*	YANJ020101*
	CHAM830108	SNEP660101
	PALJ810113	BUNA790103
	WILM950104	CRAJ730101
	BURA740101	TANS770102
	JOND920102	BULH740101
	AVBF000103#	GEIM800103
		PALJ810107
		GEIM800105
		VELV850101
		COSI940101#
		ISOY800107
		CHOP780211

Features in Subset 1 are selected by MT-Feat3 with window size 7. Features in Subset 2 are selected by MT-Feat3 with optimized window sizes across 4 kinase family datasets.
*Common features shared by subset 1 (20 features) and subset 2 (26 features).
# Features filtered by the Metric multi-dimensional scaling method.

ISSN: 1477-5956