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Table 1 The most abundant proteins identified in phenol, acid, and phenol-acid extracted suspension cell and protoplast nuclear samples

From: Nuclear proteome response to cell wall removal in rice (Oryza sativa)

TIGR ID Annotation Peptide (Hits)
Phenol-Extracted
LOC_Os03g22740 Nucleolar protein NOP5-1, putative, expressed 108
LOC_Os08g04240 Cysteine-rich repeat secretory protein 55 precursor, putative, expressed 75
LOC_Os11g10480 Dehydrogenase, putative, expressed 73
LOC_Os03g22730 Nucleolar protein NOP5-1, putative, expressed 67
LOC_Os05g08360 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed 51
LOC_Os04g40950 Glyceraldehyde-3-phosphate dehydrogenase, putative, expressed 48
LOC_Os08g04250 Cysteine-rich repeat secretory protein 55 precursor, putative, expressed 47
LOC_Os03g22880 Nucleolar protein 5A, putative, expressed 46
LOC_Os02g57590 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed 44
LOC_Os02g38920 Glyceraldehyde-3-phosphate dehydrogenase, putative, expressed 44
Acid-Extracted
LOC_Os08g04240 Cysteine-rich repeat secretory protein 55 precursor, putative, expressed 125
LOC_Os08g04250 Cysteine-rich repeat secretory protein 55 precursor, putative, expressed 107
LOC_Os08g04210 Cysteine-rich repeat secretory protein 55 precursor, putative, expressed 81
LOC_Os04g52960 Nucleolin, putative, expressed 70
LOC_Os03g22730 Nucleolar protein NOP5-1, putative, expressed 65
LOC_Os03g22740 Nucleolar protein NOP5-1, putative, expressed 63
LOC_Os07g44190 h/ACA ribonucleoprotein complex subunit 4, putative, expressed 51
LOC_Os01g61920 Histone H4 42
LOC_Os05g38640 Probable histone H2A.4 41
LOC_Os05g02300 Probable histone H2A.6 41
Phenol-Acid-Double Extracted
LOC_Os02g56960 Ribosomal protein, putative, expressed 146
LOC_Os05g38640 Probable histone H2A.4 99
LOC_Os05g02300 Probable histone H2A.6 99
LOC_Os03g17100 Probable histone H2A.5 99
LOC_Os07g36500 Histone H4 70
LOC_Os01g61920 Histone H4 70
LOC_Os01g05900 Histone H2B.10 43
LOC_Os01g05630 Histone H2B.4 43
LOC_Os01g05610 Histone H2B.3 43
LOC_Os07g36140 Probable histone H2A.2 39