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Table 1 The most abundant proteins identified in phenol, acid, and phenol-acid extracted suspension cell and protoplast nuclear samples

From: Nuclear proteome response to cell wall removal in rice (Oryza sativa)

TIGR ID

Annotation

Peptide (Hits)

Phenol-Extracted

LOC_Os03g22740

Nucleolar protein NOP5-1, putative, expressed

108

LOC_Os08g04240

Cysteine-rich repeat secretory protein 55 precursor, putative, expressed

75

LOC_Os11g10480

Dehydrogenase, putative, expressed

73

LOC_Os03g22730

Nucleolar protein NOP5-1, putative, expressed

67

LOC_Os05g08360

rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed

51

LOC_Os04g40950

Glyceraldehyde-3-phosphate dehydrogenase, putative, expressed

48

LOC_Os08g04250

Cysteine-rich repeat secretory protein 55 precursor, putative, expressed

47

LOC_Os03g22880

Nucleolar protein 5A, putative, expressed

46

LOC_Os02g57590

rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed

44

LOC_Os02g38920

Glyceraldehyde-3-phosphate dehydrogenase, putative, expressed

44

Acid-Extracted

LOC_Os08g04240

Cysteine-rich repeat secretory protein 55 precursor, putative, expressed

125

LOC_Os08g04250

Cysteine-rich repeat secretory protein 55 precursor, putative, expressed

107

LOC_Os08g04210

Cysteine-rich repeat secretory protein 55 precursor, putative, expressed

81

LOC_Os04g52960

Nucleolin, putative, expressed

70

LOC_Os03g22730

Nucleolar protein NOP5-1, putative, expressed

65

LOC_Os03g22740

Nucleolar protein NOP5-1, putative, expressed

63

LOC_Os07g44190

h/ACA ribonucleoprotein complex subunit 4, putative, expressed

51

LOC_Os01g61920

Histone H4

42

LOC_Os05g38640

Probable histone H2A.4

41

LOC_Os05g02300

Probable histone H2A.6

41

Phenol-Acid-Double Extracted

LOC_Os02g56960

Ribosomal protein, putative, expressed

146

LOC_Os05g38640

Probable histone H2A.4

99

LOC_Os05g02300

Probable histone H2A.6

99

LOC_Os03g17100

Probable histone H2A.5

99

LOC_Os07g36500

Histone H4

70

LOC_Os01g61920

Histone H4

70

LOC_Os01g05900

Histone H2B.10

43

LOC_Os01g05630

Histone H2B.4

43

LOC_Os01g05610

Histone H2B.3

43

LOC_Os07g36140

Probable histone H2A.2

39