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Table 1 Secreted components of the A. salmonicida T3SS

From: The Aeromonas salmonicida subsp. salmonicida exoproteome: determination of the complete repertoire of Type-Three Secretion System effectors and identification of other virulence factors

Locus

Uniprot

Name

Description

Fold change in SNs Log 2wt/mut [PMSS] 1and [LFQ] 2

[Unique peptides] 3and [MS/MS Count] 4

PEP GP

PEP SP

Modlab (>0.4)

Effective (>0.95)

SignalP

TatP

Eukaryotic domain

GP

SP

wt GP

mut GP

wt SP

mut SP

Effectors

ASA_P5G009

G7D171

AopH

Putative tyrosine phosphatase

4.061

3.07

623

37

67

61

0.00E + 00

0.00E + 00

n

y

n

n

PF00102

9.362

8.25

27534

288

7348

2155

ASA_P5G045

A4SUE7

Ati2

Inositol polyphosphate 5-phosphatase

4.41

3.61

60

41

51

46

0.00E + 00

0.00E + 00

y

y

n

n

PF03372

6.78

9.27

3078

339

4161

521

ASA_4266

G7D0E2

AexT

GTPase, ADPribosylase

3.91

2.99

51

34

45

43

0.00E + 00

0.00E + 00

y

y

n

n

PF01129

7.78

9.09

2178

315

4530

708

pAsal1_03

G7D197

AopP

Inhibition of NF-k B translocation in nucleus

3.46

3.34

27

14

23

19

4.12E-284

0.00E + 00

y

y

n

n

-

5.01

7.46

281

70

138

18

ASA_P5G098

G7D0W5

AopO

Putative serine/threonine kinase

10.34

6.46

40

7

53

33

5.48E-235

0.00E + 00

y

y

n

n

cd06612

11.93

12.38

94

0

483

4

ASA_P5G075

A4SUH7

AopN

Secretion control of translocators and immune suppressor

4.53

2.72

17

10

23

19

1.69E-209

0.00E + 00

y

n

n

n

-

6.82

6.70

178

22

455

73

ASA_P5G062

A4SUG4

ExsE

Regulator, chaperone for ExsC

4.52

3.52

9

4

10

9

2.73E-106

2.98E-113

n

n

n

n

-

5.85

8.56

51

7

101

37

Translocon

ASA_P5G065

A4SUG7

AopB

Translocon, Hydrophobic translocators, Pore in host cell

6.77

2.88

21

11

16

13

0.00E + 00

0.00E + 00

y

y

n

n

-

11.12

6.11

428

16

381

34

ASA_P5G064

A4SUG6

AopD

Translocon, Hydrophobic translocators, Pore in host cell

4.06

3.07

24

13

31

26

0.00E + 00

0.00E + 00

y

y

n

n

-

7.59

8.98

322

26

1377

158

ASA_P5G067

A4SUG9

AcrV

Middle substrate, tip translocon, Hydrophilic translocators, Protective antigen, anti-host factor

10.13

3.77

28

8

30

26

6.61E-233

0.00E + 00

n

y

n

n

-

10.54

9.59

85

0

391

50

ASA_P5G066

A4SUG8

AcrH

Chaperone for AopB/AopD

0

4.81

3

2

5

3

9.26E-13

5.80E-22

n

n

n

n

PF13414

6.30

4.94

7

1

10

1

Needle

ASA_P5G054

A4SUF6

AscF

Early substrate, needle subunit

6.19

7.48

7

3

9

6

1.26E-105

9.02E-226

n

y

n

n

-

4.07

8.05

12

0

46

0

ASA_P5G078

A4SUI0

AscP

Needle length control, Ruler protein, Regulation of secretion, substrate specifity switch

7.41

4.32

7

1

14

9

3.21E-68

0.00E + 00

y

y

n

n

-

24.39

10.76

28

0

87

4

ASA_P5G052

A4SUF4

AscH

Regulator needle assembling

7.35

8.85

12

0

19

14

7.89E-31

1.86E-101

y

n

n

n

-

25.77

8.04

17

0

100

6

Others

ASA_P5G046

A4SUE8

Ati1

Chaperone Ati2

7.11

5.62

7

2

3

1

3.11E-53

4.58E-34

y

n

n

n

-

6.83

25.49

10

0

8

0

ASA_P5G072

A4SUH4

AscX

Unknown function, chaperoned by AscY

5.51

4.90

5

2

4

1

8.63E-30

9.43E-13

y

n

n

n

-

20.64

25.43

4

0

11

0

  1. The table shows fold changes for GP and SP in SNs (Log base 2 [wt/mut]) for PMSS and LFQ values, unique peptides, MS/MS Counts, PEP values, prediction for T3-effectors (Modlab and Effective) and secretion by alternative systems (SignalP and TatP), and the presence of eukaryotic domains in the protein.
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Proteome Science

ISSN: 1477-5956