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Table 2 Oversecreted proteins by A. salmonicida wt strain

From: The Aeromonas salmonicida subsp. salmonicida exoproteome: determination of the complete repertoire of Type-Three Secretion System effectors and identification of other virulence factors

Locus

Uniprot

Name

Description

Fold change in SNs Log 2(wt/mut) [PMSS] 1and [LFQ] 2

[Unique peptides] 3and [MS/MS Count] 4

PEP GP

PEP SP

Modlab (>0.4)

Effective (>0.95)

SignalP

TatP

Eukaryotic domain

GP

SP

wt GP

mut GP

wt SP

mut SP

With a predicted signal for T3SS

ASA_0292

A4SHV8

EF-G

Elongation factor G

2.421

0.98

333

25

41

40

0.00E + 00

0.00E + 00

y

n

n

n

-

3.602

1.27

734

19

181

106

ASA_0275

A4SHU2

EF-Tu

Elongation factor Tu

1.03

1.08

24

21

24

23

2.98E-220

0.00E + 00

n

y

n

n

PF03143

ASA_0293

2.49

2.15

52

34

118

81

PF01926

ASA_2996

A4SQ25

DnaK

Chaperone protein DnaK

2.91

0.85

30

22

37

37

2.28E-272

0.00E + 00

y

n

n

n

PF00012

3.27

0.30

59

11

150

78

ASA_1014

A4SJR9

Pnp

Polyribonucleotide nucleotidyltransferase

7.94

1.33

15

14

17

16

1.55E-89

6.02E-126

y

y

n

n

PF03726

3.42

0.52

23

1

36

17

PF13014

PF07650

ASA_1826

A4SLY0

HtpG

Chaperone protein HtpG

2.80

7.78

18

14

24

21

7.44E-102

2.58E-181

n

y

n

n

-

5.40

4.83

27

3

44

1

ASA_2347

A4SNC4

MdeA

Methionine gamma-lyase

1.98

0.35

10

8

8

8

1.14E-68

2.52E-51

n

y

n

n

PF00155

1.45

0.80

15

5

26

24

PF00266

ASA_1990

A4SMD9

PepN

Aminopeptidase N

5.81

4.67

5

4

3

4

1.14E-14

1.00E-13

n

y

n

n

PF11940

4.97

4.37

6

0

6

1

PF01433

ASA_4301

G7D0H6

OpdA

Oligopeptidase A

4.21

0.00

3

3

2

4

1.61E-08

2.78E-08

y

y

n

n

PF01432

3.33

2.12

3

0

3

0

Without any signal for secretion but having homologues T3 secreted in other bacteria

ASA_P5G088

A4SUI8

-

α/β hydrolase

2.50

1.81

9

6

5

6

2.08E-56

8.03E-19

n (0.36)

n

n

n

PF12697

2.16

-2.05

12

3

12

10

PF12695

PF02129

PF00561

PF00326

PF12146

PF01738

PF08840

PF07859

ASA_3402

A4SR55

Pta

Phosphate acetyltransferase

7.13

1.42

9

7

4

3

2.98E-87

5.28E-66

n

n

n

n

PF01515

3.55

-0.39

8

0

8

2

Without any signal for secretion

ASA_4119

A4ST37

TypA (BipA)

GTP binding protein

2.12

2.24

14

12

19

18

2.93E-98

1.52E-178

n

n

n

n

PF01926 PF08477

2.69

1.84

31

11

49

12

ASA_1768

A4SLS5

RpsA

30S ribosomal protein S1

2.62

1.77

15

13

7

7

1.27E-135

1.40E-78

n

n

n

n

-

7.33

3.00

14

1

9

4

ASA_1202

A4SK88

TktA

Transketolase 1

0.88

2.43

13

12

20

19

1.34E-82

8.67E-175

n

n

n

n

PF00456

2.67

1.22

14

13

32

8

PF13292

ASA_0427

A4SI83

AcnB

Aconitate hydratase 2

6.86

0.78

13

6

11

11

3.46E-52

2.17E-117

n

n

n

n

PF00330

5.65

1.77

13

0

20

10

ASA_4076

A4SSZ5

RplX

50S ribosomal protein L24

6.01

1.86

5

4

9

9

4.94E-38

4.46E-89

n

n

n

n

PF00467

1.11

1.00

5

0

37

23

ASA_4087

A4ST06

RplC

50S ribosomal protein L3

2.24

5.67

6

5

6

6

1.14E-65

5.13E-33

n

n

n

n

PF00297

3.03

2.24

26

12

16

4

ASA_0684

A4SIX5

IleS

Isoleucine-tRNA ligase

5.92

2.17

7

7

13

13

4.17E-61

2.45E-50

n

n

n

n

PF00133

3.14

0.39

11

0

18

10

PF08264

PF09334

PF13603

PF01406

PF06827

ASA_1068

A4SJW8

LeuS

Leucine tRNA ligase

4.86

1.11

3

3

2

3

7.59E-21

1.04E-18

n

0.91

n

n

PF13603

3.17

4.42

2

0

2

0

PF00133

PF09334

PF08264

ASA_0707

A4SIZ7

RpsF

30S ribosomal protein S6

5.15

5.74

3

3

4

3

2.90E-24

1.66E-10

n

n

n

n

-

-14.13

7.23

2

0

19

2

ASA_1442

A4SKW9

WecB

UDP-N-acetylglucosamine 2-epimerase

1.65

0.99

4

3

6

6

1.41E-30

9.18E-24

n

n

n

n

PF02350

21.57

1.21

2

0

7

5

With a signal for secretion by the Sec-dependent pathway

ASA_1267

A4SKF2

OmpAI

Outer membrane protein AI

7.22

6.94

8

5

11

6

9.60E-91

1.27E-145

n

n

y

n

-

1.02

3.43

12

0

37

0

ASA_1544

A4SL60

OmpK40

Outer membrane protein K40

5.80

5.70

8

8

7

6

4.58E-23

7.69E-85

n

n

y

n

-

2.32

6.93

10

1

16

0

ASA_3619

A4SRQ8

-

Hypothetical ABC-type Fe3 + -hydroxamate transport system component

5.27

4.08

3

2

6

5

8.50E-36

4.00E-16

n

n

y

n

-

4.71

5.77

5

0

21

3

ASA_0330

A4SHZ1

DegQ

Serine protease

1.97

0.00

5

5

2

2

3.03E-43

4.23E-69

n

n

y

n

PF13180

PF00089

3.24

2.59

7

5

3

0

ASA_0716

A4SJ06

-

Insulinase, peptidase M16

2.61

0.53

16

11

11

11

6.18E-98

6.71E-125

n

n

y

n

PF05193

4.55

1.28

22

3

12

9

PF00675

ASA_0852

A4SJC4

-

Hypothetical outer membrane lipoprotein

4.92

6.39

4

1

3

3

9.71E-08

5.69E-56

n

n

y

n

-

20.61

4.48

7

0

10

0

  1. The table shows fold changes for GP and SP in SNs (Log base 2 [wt/mut]) for PMSS and LFQ values, unique peptides, MS/MS Counts, PEP values, prediction for T3-effectors (Modlab and Effective) and secretion by alternative systems (SignalP and TatP), and the presence of eukaryotic domains in the protein.
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Proteome Science

ISSN: 1477-5956