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Table 3 Other characterized or putative virulence factors of A. salmonicida

From: The Aeromonas salmonicida subsp. salmonicida exoproteome: determination of the complete repertoire of Type-Three Secretion System effectors and identification of other virulence factors

Locus

Uniprot

Name

Description

Fold change in SNs wt/mut [PMSS] 1and [LFQ] 2

[Unique peptides] 3and [MS/MS Count] 4

PEP GP

PEP SP

Modlab (>0.4)

Effective (>0.95)

SignalP

TatP

Eukaryotic domain

Log 2(wt/mut) GP

Log 2(wt/mut) SP

wt GP

mut GP

wt SP

mut SP

Other characterized virulence factors

ASA_1438

A4SKW5

VapA

Tetragonal surface virulence array protein

-3.181

-1.66

353

42

39

40

0.00E + 00

0.00E + 00

n

n

y

n

-

-7.092

-4.02

2844

2096

1203

3044

ASA_3906

A4SSI7

AerA

Aerolysin A

-2.43

-0.69

18

28

27

28

7.56E-292

0.00E + 00

n

n

y

n

PF03318

-6.58

-0.85

79

351

358

560

ASA_2854

A4SPP5

AerB

Aerolysin B

-2.28

-0.20

24

25

33

33

7.45E-255

0.00E + 00

n

n

y

n

PF00652

-3.20

0.28

25

161

259

284

ASA_0509

A4SIF4

SatA

Glycero-phospholipid-cholesterol acyltransferase

-1.54

-0.89

16

15

24

24

2.62E-221

0.00E + 00

n

n

y

n

 

-5.08

-2.95

42

110

393

669

PF00657

PF13472

ASA_4288

A4STJ0

PlaA1

Phospholipase A1

-0.14

0.21

22

23

24

23

0.00E + 00

0.00E + 00

n

n

n

n

-

-2.66

-1.87

31

39

121

119

ASA_0635

A4SIS6

PlaC

Phospholipase C

-4.90

-6.49

2

5

8

10

2.22E-14

4.03E-81

n

n

y

n

PF03372

-6.86

-2.01

0

5

4

20

ASA_3321

A4SQY1

TagA

Metalloprotease/mucinase ToxR-regulated lipoprotein

-2.28

-0.92

30

31

38

38

5.47E-206

0.00E + 00

n

n

y

n

-

-6.12

-2.38

30

137

230

406

ASA_2540

A4SNU7

Ahe2

Serine protease

-1.91

-0.86

31

34

49

49

0.00E + 00

0.00E + 00

n

n

y

n

PF01483

-5.65

-2.51

529

1363

4391

6633

ASA_0604

A4SIP8

ChiY

Chitin-binding protein

-3.24

-1.03

15

19

22

24

2.64E-275

0.00E + 00

n

n

n

n

PF03067

-6.29

-1.94

17

124

309

548

ASA_1199

A4SK85

Nuc

Extracellular desoxyribonuclease

NV

-2.61

0

0

9

9

NV

4.65E-86

n

n

y

n

PF04231

-3.19

0

0

6

20

ASA_3475

A4SRC1

Eno

Enolase

0.85

-0.98

15

17

17

20

6.58E-271

0.00E + 00

n

n

n

n

PF00113

PF03952

0.44

-1.70

50

35

34

80

PF07476

ASA_3132

A4SQF4

PepO

Peptidase M13

NV

NV

NV

NV

NV

NV

NV

NV

n

n

y

n

PF05649

PF01431

Putative virulence factors

ASA_0826

A4SJA3

Asx

RTX large exoprotein

-0.50

-0.22

92

90

106

107

0.00E + 00

0.00E + 00

n

n

n

n

PF00092

-1.11

-1.15

1372

1991

3830

4248

ASA_3723

A4SS12

-

Microbial collagenase

-0.83

-0.67

66

64

80

80

0.00E + 00

0.00E + 00

n

n

y

n

-

-0.96

-0.90

529

974

3304

4967

ASA_2541

A4SNU8

-

Unknown

-2.20

-1.01

11

11

13

14

1.91E-144

0.00E + 00

n

n

y

n

-

-5.88

-3.83

121

582

1571

2701

ASA_2206

A4SMZ6

NucH

Nuclease

-2.09

-0.69

39

43

41

41

0.00E + 00

0.00E + 00

n

n

y

n

PF03160

-5.38

-1.48

75

289

215

345

PF03372

ASA_3073

A4SQ99

-

Leucine aminopeptidase

-2.31

-0.78

13

14

17

17

1.39E-191

0.00E + 00

n

n

y

n

PF04389

-5.13

-2.04

40

157

1074

1519

PF01546

pRA1_0073

C6GA30

-

Group 3 Ig-like domain protein

-0.80

-0.34

43

42

85

85

0.00E + 00

0.00E + 00

n

n

y

n

-

-1.30

-1.33

67

108

859

992

ASA_P4G163

A4SU89

-

Group 3 Ig-like domain

-0.59

-0.36

10

10

16

16

1.01E-102

0.00E + 00

n

n

y

n

-

-1.65

-1.21

19

36

171

207

ASA_0873

A4SJD6

CdxA

Chitinase

-1.50

-0.76

27

29

50

51

0.00E + 00

0.00E + 00

n

n

y

y

PF00704

-2.75

-1.31

48

165

305

553

PF02839

ASA_2142

A4SMT5

Chi2

Chitinase

-4.10

-2.39

11

17

22

25

5.49E-126

0.00E + 00

n

n

y

n

PF00182

-7.15

-2.91

5

86

56

235

PF02839

ASA_3320

A4SQY0

ChiB

Chitinase

-2.59

-1.07

13

13

27

27

4.47E-159

0.00E + 00

n

n

y

n

PF00182

-4.79

-2.82

19

94

180

370

PF02839

ASA_3982

A4SSR0

Taxi

TRAP-associated extracytoplasmic immunogenic

0.51

-1.50

11

9

16

18

4.95E-131

0.00E + 00

n

n

y

n

PF09084

0.22

0.20

18

18

63

127

ASA_0849

G7CXH6

PrtV

immune inhibitor A metalloprotease

-0.16

1.19

16

17

29

29

1.92E-129

0.00E + 00

y

n

n

n

-

-2.54

0.67

17

28

169

82

ASA_1287

A4SKH1

LasA

Metalloprotease

-2.82

-1.45

10

13

13

13

2.90E-123

0.00E + 00

n

y

n

n

PF01551

-6.19

-4.03

16

81

146

349

ASA_1027

A4SJT2

-

LysM domain-containing protein

-0.57

1.00

10

10

12

12

1.92E-87

4.24E-187

n

n

y

n

PF01476

-1.71

0.46

20

32

135

87

ASA_1998

A4SME7

-

GlyGly-CTERM protein

-1.80

-1.20

21

24

29

29

3.33E-303

0.00E + 00

n

n

y

n

-

-2.17

-1.01

26

91

115

226

ASA_1199

A4SK85

-

Extracellular desoxyribonuclease

NV

-2.61

NV

NV

9

9

NV

4.65E-86

n

n

y

n

PF04231

-3.19

6

20

ASA_P4G031

A4STW2

-

Micrococcal nuclease (SNase-like)

-0.45

-5.77

3

3

6

7

1.24E-04

9.28E-20

n

y

n

n

PF00565

-0.51

-3.82

3

4

3

29

  1. The table shows fold changes for GP and SP in SNs (Log base 2 [wt/mut]) for PMSS and LFQ values, unique peptides, MS/MS Counts, PEP values, prediction for T3-effectors (Modlab and Effective) and secretion by alternative systems (SignalP and TatP), and the presence of eukaryotic domains in the protein.
  2. NV: No value, not detected.
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