Table 4 Examples of protein-protein interactions involving sproteins
From: Exploring the “dark matter” of a mammalian proteome by protein structure and function modeling
Rank | Sprotein | Model confidence a | PPI b | CATH assignment | ||
|---|---|---|---|---|---|---|
Domain | TM-score c | Classification | ||||
1 | B930036P11 | 0.48 | 1,757 | 1ji4A00 | 0.82 | 1.20.1260 (Ferritin) |
2 | E430007D20 | 0.47 | 1,638 | 2x75A02 | 0.59 | 1.20.200 (Fumarase C) |
3 | G530013D06 | 0.55 | 1,596 | 3m5jB00 | 0.80 | 3.90.20 (Hemagglutinin ectodomain) |
4 | A730094F08 | 0.44 | 1,525 | 1pd3A00 | 0.75 | 1.10.287 (Helix hairpins) |
5 | 1110020 M21 | 0.46 | 1,420 | 1wp1B01 | 0.57 | 1.20.1600 (Outer membrane efflux proteins) |
6 | 2310075O16 | 0.45 | 1,416 | 3ud0A00 | 0.56 | 1.10.3080 (Clc chloride channel) |
7 | 6720468P07 | 0.41 | 1,390 | 1wdzA00 | 0.62 | 1.20.1270 (Substrate binding domain of Dnak) |
8 | I830091D09 | 0.83 | 1,311 | 1icwB00 | 0.80 | 2.40.50 (Dihydrolipoamide Acetyltransferase) |
9 | G630033A22 | 0.52 | 1,295 | 1y9qA01 | 0.71 | 1.10.260 (434 Repressor, N-term) |
10 | K430331D04 | 0.41 | 1,287 | 2jexA01 | 0.97 | 1.10.287 (Helix hairpins) |