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Table 1 The comparison of various algorithms using Gavin dataset.

From: Detecting overlapping protein complexes in PPI networks based on robustness

Algorithm

N cp

| P|

Precision(%)

Recall(%)

F-measure(%)

MCL

103

232

44.40

42.76

43.56

CPM

54

98

55.10

20.79

30.19

CoAch

178

326

54.60

41.36

47.06

Our algorithm

116

185

62.70

38.32

47.56

  1. Table 1 shows the comparison of MCL, CPM, CoAch and our algorithm using Gavin dataset. The comparison is based on the number of predicted complexes, the number of predicted complexes which match at least one known protein complex, precision, recall and F-measure.
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Proteome Science

ISSN: 1477-5956