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Table 1 Protein systems of study.

From: HopDock: a probabilistic search algorithm for decoy sampling in protein-protein docking

PDB ID (Chains) Size(Number of Atoms) Functional Classification
1C1Y (A,B) 1376, 658 Signaling Protein
1DS6 (A,B) 1413, 1426 Signaling Protein
1TX4 (A,B) 1579, 1378 Complex(gtpase Activatn/proto Oncogene)
1WWW (W,Y) 862, 782 Nerve Growth Factor/trka Complex
1FLT (V,Y) 770, 758 Complex (growth Factor/transferase)
1IKN (A,C) 2262, 916 Transcription Factor
1IKN (C,D) 916, 1589 Transcription Factor
1VCB (A,B) 755, 692 Transcription
1VCB (B,C) 692, 1154 Transcription
1OHZ* (A,B) 1027, 416 Cell Adhesion
1T6G* (A,C) 2628, 1394 Hydrolase Inhibitor
1ZHI* (A,B) 1597, 1036 Transcription/replication
2HQS* (A,C) 3127, 856 Transport Protein/lipoprotein
1QAV (A,B) 663, 840 Membrane Protein/oxidoreductase
1G4Y (B,R) 682, 1156 Signaling Protein
1CSE (E,I) 1920, 522 Complex(serine Proteinase Inhibitor)
1G4U (R,S) 1398, 2790 Signaling Protein
  1. Details are provided on the dimers selected in this study. PDB ID of known native structure along with chains in bracket is shown in column 1. Column 2 lists the number of atoms per unit in a dimer, and column 3 shows the known functional classification of each dimer. CAPRI targets are marked with an asterisk.