Table 1 Protein systems of study.
From: HopDock: a probabilistic search algorithm for decoy sampling in protein-protein docking
PDB ID (Chains) | Size(Number of Atoms) | Functional Classification |
|---|---|---|
1C1Y (A,B) | 1376, 658 | Signaling Protein |
1DS6 (A,B) | 1413, 1426 | Signaling Protein |
1TX4 (A,B) | 1579, 1378 | Complex(gtpase Activatn/proto Oncogene) |
1WWW (W,Y) | 862, 782 | Nerve Growth Factor/trka Complex |
1FLT (V,Y) | 770, 758 | Complex (growth Factor/transferase) |
1IKN (A,C) | 2262, 916 | Transcription Factor |
1IKN (C,D) | 916, 1589 | Transcription Factor |
1VCB (A,B) | 755, 692 | Transcription |
1VCB (B,C) | 692, 1154 | Transcription |
1OHZ* (A,B) | 1027, 416 | Cell Adhesion |
1T6G* (A,C) | 2628, 1394 | Hydrolase Inhibitor |
1ZHI* (A,B) | 1597, 1036 | Transcription/replication |
2HQS* (A,C) | 3127, 856 | Transport Protein/lipoprotein |
1QAV (A,B) | 663, 840 | Membrane Protein/oxidoreductase |
1G4Y (B,R) | 682, 1156 | Signaling Protein |
1CSE (E,I) | 1920, 522 | Complex(serine Proteinase Inhibitor) |
1G4U (R,S) | 1398, 2790 | Signaling Protein |