Table 8 Statistically Ranked Patterns Discovered from the Sequences of the ubiquitin Family.
From: Ranking and compacting binding segments of protein families using aligned pattern clusters
Ranking | Pattern | Frequency | Score | Binding Residue |
|---|---|---|---|---|
1 | MQIFVK TLTGK TITLEVEPSDTIENVK AK I | 21 | 5.44E+44 | Lys6, Lys11, Lys27, |
| Â | QDK EGIPPDQQRLIFAGK QLEDGRTLSDYN | Â | Â | Lys29, Lys33, Lys48, |
| Â | IQK ESTLHLVLRLRGG | Â | Â | Lys63 |
2 | MQIFVK TLTGK TITLEVESSDTIDNVK AK I | 15 | 2.86E+44 | Lys6, Lys11, Lys27, |
| Â | QDK EGIPPDQQRLIFAGK QLEDGRTLADYN | Â | Â | Lys29, Lys33, Lys48, |
| Â | IQK ESTLHLVLRLRGG | Â | Â | Lys63 |
3 | SDTIENVK AK IQDK EGIPPDQQRLIFAGK Q | 24 | 1.25E+33 | Lys27, Lys29, Lys33, |
| Â | LEDGRTLSDYNIQK ESTLHLVLRLRGG | Â | Â | Lys48, Lys63 |
4 | SDTIDNVK AK IQDK EGIPPDQQRLIFAGK Q | 17 | 7.59E+32 | Lys27, Lys29, Lys33, |
| Â | LEDGRTLADYNIQK ESTLHLVLRLRGG | Â | Â | Lys48, Lys63 |
5 | MQIFVK TLTGK TITLEVESSDTIDNVK AK I | 17 | 4.76E+31 | Lys6, Lys11, Lys27, |
| Â | QDK EGIPPDQQRLIFAGK QLEDGRTL | Â | Â | Lys29, Lys33, Lys48 |
6 | IENVK AK IQDK EGIPPDQQRLIFAGK QL | 32 | 3.48E+31 | Lys27, Lys29, Lys33, |
| Â | EDGRTLSDYNIQK ESTLHLVLRLRGG | Â | Â | Lys48, Lys63 |
7 | VK TLTGK TITLEVESSDTIDNVK AK IQD | 17 | 1.59E+30 | Lys6, Lys11, Lys27, |
| Â | K EGIPPDQQRLIFAGK QLEDGRTLAD | Â | Â | Lys29, Lys33, Lys48 |
8 | TITLEVEPSDTIENVK AK IQDK EGIPPD | 24 | 8.80E+28 | Lys27, Lys29, Lys33, |
| Â | QQRLIFAGK QLEDGRTLSDYNI | Â | Â | Lys48 |
9 | K IQDK EGIPPDQQRLIFAGK QLEDGRTL | 39 | 7.43E+27 | Lys29, Lys33, Lys48, |
| Â | SDYNIQK ESTLHLVLRLRGG | Â | Â | Lys63 |
10 | K EGIPPDQQRLIFAGK QLEDGRTLSDY | 44 | 3.66E+23 | Lys33, Lys48, Lys63 |
| Â | NIQK ESTLHLVLR | Â | Â | Â |
11 | IPPDQQRLIFAGK QLEDGRTLADYNIQ | 20 | 3.38E+23 | Lys48, Lys63 |
| Â | K ESTLHLVLRLRGG | Â | Â | Â |
12 | NVK AK IQDK EGIPPDQQRLIFAGK QLE | 36 | 6.15E+21 | Lys27, Lys29, Lys33, |
| Â | DGRTLSDYNI | Â | Â | Lys48 |
13 | K IQDK EGIPPDQQRLIFAGK QLEDGRT | 44 | 5.20E+18 | Lys29, Lys33, Lys48 |
| Â | LSDYN | Â | Â | Â |
14 | K IQDK EGIPPDQQRLIFAGK QLEDGRT | 19 | 2.23E+16 | Lys29, Lys33, Lys48 |
| Â | LAD | Â | Â | Â |
15 | K TLTGK TITLEVESSDTIDNVK AK IQD | 19 | 8.01E+15 | Lys6, Lys11, Lys27, |
| Â | K EG | Â | Â | Lys29, Lys33 |
16 | MQIFVK TLTGK TITLEVEPSDTIENVK | 25 | 1.17E+15 | Lys6, Lys11, Lys27 |
17 | MQIFVK TLTGK TITLEVESSDTIDNVK | 23 | 8.48098E+14 | Lys6, Lys11, Lys27 |
18 | DYNIQK ESTLHLVLRLRGG | 62 | 2.40964E+11 | Lys63 |
19 | MQIFVK TLTGK TITLEVE | 60 | 17382565255 | Lys6, Lys11 |
20 | K TLTGK TITLEVESSDTI | 26 | 1135719784 | Lys6, Lys11 |
21 | LEVESSDTIDNVK | 26 | 7757459.08 | Lys27 |
22 | TITLEVEPS | 28 | 28304.96142 | Â |
23 | K TLTGK T | 67 | 3796.714675 | Lys6, Lys11 |
24 | DGRTLAD | 23 | 1298.702247 | Â |
25 | STLHL | 69 | 1102.599421 | Â |
26 | K TITL | 67 | 315.8836468 | Lys11 |
27 | IENVK | 38 | 309.1891137 | Lys27 |
28 | VEPSD | 28 | 260.0761993 | Â |
29 | TLADY | 23 | 191.1286116 | Â |
30 | IDNVK | 29 | 180.0682775 | Lys27 |