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Table 2 De novo sequenced peptide candidates of P. halstedii predicted by PEAKS online, PepNovo, and CompNovo

From: Identification of a novel Plasmopara halstedii elicitor protein combining de novo peptide sequencing algorithms and RACE-PCR

m/z z Sequence de novo score Position (consensus [%])
425.7 2 YADLLQK 94 468 - 474 (100)
   YADLLKK 111 468 - 474 (100)
   YANNLQK 0.223 468 - 474 (71)
494.7 2 TTLSADQPR 14 302 - 310 (78)
   TTLSADS [313.151] 98 302 - 308 (86)
   TTLSADQPR 0.029 302 - 310 (78)
517.7 2 NPFGMOxEVPK 37 526 - 535 (80)
   [96.894]NFGFEPVK 102 528 - 535 (75)
   PNM Ox GTTGVNK 0.130 486 - 499 (43)
535.7 2 DGTYTLDTGK 99 103 - 112 (90)
   DGTYTMQ [274.035] 95 103 - 109 (57)
   DGTYTLDTGK 0.080 103 - 112 (90)
542.7 2 LPDFYNTSK 99 368 - 376 (89)
   LPDM Ox YNTSK 96 368 - 376 (89)
   DGTYTLDTGK 0.080 103 - 112 (90)
554.7 2 YLVDEAPSSK 100 122 - 131 (90)
   YLVDEAP [321.163] 93 122 - 128 (86)
   YLVDEASRR 0.122 122 - 130 (56)
575.2 2 DPNMOxGFEVPK 19 526 - 535 (100)
   [212.052 ]NFGM Ox LDPK 90 528 - 535 (75)
   DKDDTTMVPK 0.120 553 - 562 (40)
638.3 2 CCAMeALDALGNGGSLK 34 508 - 518 (62)
   [231.052]LDALDLGD [232.049] 108 510 - 517 (63)
   DDNDALMRLGR 0.089 286 - 296 (27)
654.8 2 LGSLPENVRAPR 88 537 - 548 (83)
   LGSLPENVLN [272.154] 93 537 - 546 (100)
   LGSLPENQVVPR 0.055 537 - 548 (75)
682.3 2 WLLENVFVDTK 87 355 - 365 (91)
   [299.126]LENVM Ox TLTK 96 357 - 365 (78)
   NNALENVM Ox VDTK 0.118 354 - 365 (75)
  1. The table presents the peptide candidates predicted by PEAKS online, PepNovo (bold), and CompNovo (italic). Position of peptide candidates is shown in accordance to their position to translated ORF of P. halstedii protein (numbers in brackets represent consensus to alignment in percent).