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Table 1 Proteins whose abundance was significantly more in LD than SD at 7 days.

From: Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapevines

SSP

SD/LD

Pval

Th

Mr

Exp

Mr

Th

Pi

Exp

Pi

Pep

M

score

%

Cov

Function

SSP8731

0.34

0.00

85

83

6.1

6.1

22 (11)

592

35

5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase

SSP8726

0.09

0.03

85

83

6.1

6.3

29 (12)

829

43

5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase

SSP9702

0.10

0.03

85

83

6.1

6.4

25 (13)

783

39

5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase

SSP8718

0.14

0.01

85

83

6.1

6.2

29 (13)

845

44

5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase

SSP4320

0.13

0.02

37

44

5.4

5.5

12 (8)

365

46

Aspartate-semialdehyde dehydrogenase*

SSP8717

0.42

0.01

115

94

6.9

6.2

29 (15)

819

35

Glycine dehydrogenase

SSP6307

0.24

0.03

32

43

6.2

5.8

12 (2)

95

45

Cysteine synthase

SSP3311

0.18

0.04

39

42

5.4

5.3

14 (8)

572

54

Glutamine synthetase*

SSP4315

0.11

0.01

39

42

5.7

5.5

7 (5)

293

21

Glutamine synthetase cytosolic*

SSP7608

0.09

0.00

65

65

5.9

6.0

17 (9)

462

35

Pyruvate decarboxylase isozyme 2

SSP9108

0.08

0.05

27

28

6.3

6.3

11 (5)

416

64

Triosephosphate isomerase, cytosolic

SSP7601

0.43

0.01

67

77

6.0

5.8

20 (9)

316

47

Transketolase, chloroplast precursor

SSP1518

0.42

0.01

59

60

6.6

5.0

24 (11)

626

51

ATP synthase beta chain 2, mitochondrial

SSP2105

0.15

0.00

32

30

6.0

5.1

11 (8)

331

42

Inorganic pyrophosphatase*

SSP3611

0.07

0.04

69

72

5.2

5.3

29 (12)

448

52

V-type H+-transporting ATPase subunit A

SSP3618

0.13

0.02

69

71

5.2

5.3

35 (13)

668

60

V-type H+-transporting ATPase subunit A

SSP4709

0.18

0.03

102

88

6.1

5.4

22 (8)

290

25

Lipoxygenase (LOX2)*

SSP7313

0.46

0.01

37

41

5.8

5.9

12 (10)

517

28

Anthocyanidin reductase

SSP8417

0.29

0.01

43

46

6.1

6.1

19 (10)

515

47

Chalcone synthase (CHS)

SSP2221

0.13

0.01

31

35

5.0

5.1

11 (10)

468

43

Proteasome 20 S alpha subunit F2*

SSP4520

0.16

0.04

47

52

5.4

5.4

25 (14)

887

63

Proteasome 26 S AAA-ATPase subunit RPT3*

SSP1514

0.41

0.02

62

64

5.1

4.9

23 (18)

1330

53

60 kDa chaperonin alpha subunit

SSP0224

0.03

0.03

30

33

4.7

4.7

28 (10)

589

63

14-3-3 protein GF14 nu (GRF7)

SSP0216

0.09

0.01

29

30

4.8

4.7

23 (10)

554

51

14-3-3 protein GF14 omega (GRF2)

SSP0211

0.30

0.00

29

31

4.7

4.7

24 (10)

562

59

14-3-3 protein GF14 omega (GRF2)

SSP2709

0.26

0.00

90

86

5.1

5.1

38 (17)

1110

49

Cell division cycle protein 48

SSP3702

0.09

0.01

90

86

5.1

5.2

36 (17)

1060

47

Cell division cycle protein 48

SSP3712

0.16

0.00

90

86

5.1

5.2

36 (17)

1080

47

Cell division cycle protein 48

SSP5001

0.27

0.01

17

22

5.7

5.5

6 (3)

419

42

Abscisic stress ripening protein 2 (ASR2)

SSP6720

0.18

0.04

65

82

5.0

5.7

22 (6)

283

37

Heat shock protein 81-4

SSP8702

0.06

0.03

56

90

6.1

6.1

15 (8)

330

34

Elongation factor EF-2*

SSP2607

0.24

0.02

75

79

5.0

5.1

32 (14)

843

50

Elongation factor G, chloroplast precursor

SSP3408

0.29

0.02

47

53

5.4

5.3

33 (12)

534

61

Eukaryotic initiation factor 4A

SSP8712

0.18

0.00

83

83

6.4

6.2

29 (8)

443

45

EMB1138 (Embryo defective 1138)*

SSP3014

0.08

0.03

16

14

6.3

5.2

8 (7)

269

63

GRP7 (cold, circadian rhythm, and RNA binding 2) *

SSP5615

0.12

0.03

84

78

5.8

5.6

25 (4)

269

35

Protein transport protein Sec23A

SSP1215

0.06

0.01

40

36

5.0

5.0

15 (8)

430

60

Lipase GDSL

SSP0017

0.03

0.00

19

17

4.5

4.6

4 (3)

117

20

Translationally-controlled tumor protein

SSP3419

0.18

0.03

40

44

5.8

5.3

16 (8)

350

37

Unknown protein

  1. SSP, standard spot number; SD/LD, normalized spot volume in SD divided by normalized spot volume in LD, from 6 different plants; Pval, p-value; Th M r, theoretical molecular mass; Exp M r, experimental molecular mass; Th p I, theoretical pI; Exp p I, experimental pI; Pep, number of peptides mass and in ( ) the number of MS/MS ions matching the query; M score, MOWSE score; % Cov, percentage of coverage; Function, description of protein identity (*spots with multiple positive identifications)
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Proteome Science

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