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Table 1 Proteins whose abundance was significantly more in LD than SD at 7 days.

From: Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapevines

SSP SD/LD Pval Th Mr Exp Mr Th Pi Exp Pi Pep M score % Cov Function
SSP8731 0.34 0.00 85 83 6.1 6.1 22 (11) 592 35 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase
SSP8726 0.09 0.03 85 83 6.1 6.3 29 (12) 829 43 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase
SSP9702 0.10 0.03 85 83 6.1 6.4 25 (13) 783 39 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase
SSP8718 0.14 0.01 85 83 6.1 6.2 29 (13) 845 44 5-Me-tetrahydropteroyltriglu-homocys S-Me-transferase
SSP4320 0.13 0.02 37 44 5.4 5.5 12 (8) 365 46 Aspartate-semialdehyde dehydrogenase*
SSP8717 0.42 0.01 115 94 6.9 6.2 29 (15) 819 35 Glycine dehydrogenase
SSP6307 0.24 0.03 32 43 6.2 5.8 12 (2) 95 45 Cysteine synthase
SSP3311 0.18 0.04 39 42 5.4 5.3 14 (8) 572 54 Glutamine synthetase*
SSP4315 0.11 0.01 39 42 5.7 5.5 7 (5) 293 21 Glutamine synthetase cytosolic*
SSP7608 0.09 0.00 65 65 5.9 6.0 17 (9) 462 35 Pyruvate decarboxylase isozyme 2
SSP9108 0.08 0.05 27 28 6.3 6.3 11 (5) 416 64 Triosephosphate isomerase, cytosolic
SSP7601 0.43 0.01 67 77 6.0 5.8 20 (9) 316 47 Transketolase, chloroplast precursor
SSP1518 0.42 0.01 59 60 6.6 5.0 24 (11) 626 51 ATP synthase beta chain 2, mitochondrial
SSP2105 0.15 0.00 32 30 6.0 5.1 11 (8) 331 42 Inorganic pyrophosphatase*
SSP3611 0.07 0.04 69 72 5.2 5.3 29 (12) 448 52 V-type H+-transporting ATPase subunit A
SSP3618 0.13 0.02 69 71 5.2 5.3 35 (13) 668 60 V-type H+-transporting ATPase subunit A
SSP4709 0.18 0.03 102 88 6.1 5.4 22 (8) 290 25 Lipoxygenase (LOX2)*
SSP7313 0.46 0.01 37 41 5.8 5.9 12 (10) 517 28 Anthocyanidin reductase
SSP8417 0.29 0.01 43 46 6.1 6.1 19 (10) 515 47 Chalcone synthase (CHS)
SSP2221 0.13 0.01 31 35 5.0 5.1 11 (10) 468 43 Proteasome 20 S alpha subunit F2*
SSP4520 0.16 0.04 47 52 5.4 5.4 25 (14) 887 63 Proteasome 26 S AAA-ATPase subunit RPT3*
SSP1514 0.41 0.02 62 64 5.1 4.9 23 (18) 1330 53 60 kDa chaperonin alpha subunit
SSP0224 0.03 0.03 30 33 4.7 4.7 28 (10) 589 63 14-3-3 protein GF14 nu (GRF7)
SSP0216 0.09 0.01 29 30 4.8 4.7 23 (10) 554 51 14-3-3 protein GF14 omega (GRF2)
SSP0211 0.30 0.00 29 31 4.7 4.7 24 (10) 562 59 14-3-3 protein GF14 omega (GRF2)
SSP2709 0.26 0.00 90 86 5.1 5.1 38 (17) 1110 49 Cell division cycle protein 48
SSP3702 0.09 0.01 90 86 5.1 5.2 36 (17) 1060 47 Cell division cycle protein 48
SSP3712 0.16 0.00 90 86 5.1 5.2 36 (17) 1080 47 Cell division cycle protein 48
SSP5001 0.27 0.01 17 22 5.7 5.5 6 (3) 419 42 Abscisic stress ripening protein 2 (ASR2)
SSP6720 0.18 0.04 65 82 5.0 5.7 22 (6) 283 37 Heat shock protein 81-4
SSP8702 0.06 0.03 56 90 6.1 6.1 15 (8) 330 34 Elongation factor EF-2*
SSP2607 0.24 0.02 75 79 5.0 5.1 32 (14) 843 50 Elongation factor G, chloroplast precursor
SSP3408 0.29 0.02 47 53 5.4 5.3 33 (12) 534 61 Eukaryotic initiation factor 4A
SSP8712 0.18 0.00 83 83 6.4 6.2 29 (8) 443 45 EMB1138 (Embryo defective 1138)*
SSP3014 0.08 0.03 16 14 6.3 5.2 8 (7) 269 63 GRP7 (cold, circadian rhythm, and RNA binding 2) *
SSP5615 0.12 0.03 84 78 5.8 5.6 25 (4) 269 35 Protein transport protein Sec23A
SSP1215 0.06 0.01 40 36 5.0 5.0 15 (8) 430 60 Lipase GDSL
SSP0017 0.03 0.00 19 17 4.5 4.6 4 (3) 117 20 Translationally-controlled tumor protein
SSP3419 0.18 0.03 40 44 5.8 5.3 16 (8) 350 37 Unknown protein
  1. SSP, standard spot number; SD/LD, normalized spot volume in SD divided by normalized spot volume in LD, from 6 different plants; Pval, p-value; Th M r, theoretical molecular mass; Exp M r, experimental molecular mass; Th p I, theoretical pI; Exp p I, experimental pI; Pep, number of peptides mass and in ( ) the number of MS/MS ions matching the query; M score, MOWSE score; % Cov, percentage of coverage; Function, description of protein identity (*spots with multiple positive identifications)